| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1334 |
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| Symbol | |
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| ID | 6115574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1686201 |
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| End bp | 1687313 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641632822 |
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| Product | twitching motility protein |
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| Protein accession | YP_001759721 |
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| Protein GI | 170725695 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00446449 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGTTC GTCCTTTTTT AAAAATTATG GTGGAACGCA AAGCGTCGGA TCTGTTCATT
ACGGCAGGCT TCCCCCCCAG TGCGAAGATA GATGGTGAGT TAAGACCTCT AGGTGAGCAC
TCTTTCTCTG CGGCGCAGTC ATTGGAGTTT GTTGAGTCGT TAATGACCGA TGTGCAGAAG
GAGGAGTTTC ATAACACACG TGAGTGTAAC TTCGCTTTTG CAGCAAAAGA GTTAGGAAGA
TTTCGTGTTA GTGCATTTTG GCAAAGGGAG TCTCCTGGTT GCGTGATGCG TCGTATCGAA
ACAAATATTC CTGATGCTGA CGATCTCAAG CTTCCTCCCA TCTTAAAAGA TCTGGTGATG
AGTAAGCGCG GTCTTATCAT AATGGTAGGT GGTACAGGTA CCGGTAAGTC TACCTCATTG
GCTTCACTTG TTGGTTACCG TAATGCCAAT GCTCGCGGGC ATATTTTGAC CATTGAGGAT
CCTGTCGAGT TTGTCCATGA TCACCGCAAA AGTATCATTA CTCAACGTGA GGTGGGCATA
GATACAGAGT CGTTCGATGC AGCCCTAAAA AGCTCACTAC GACAGGCGCC CGATGTCATC
TTAATTGGTG AGATCAGAAC CCAAGAGACG ATGGAATTTG CGCTAGCCTT TGCTGAAACC
GGTCATTTGT GTATGGCAAC ACTTCACGCC AATAATGCTA ACCAAGCACT GGATCGTATT
ATGAACTTAG TGCCAGAGAG TAAGCATCAG CAGCTTTTGT TCGATCTCTC TTTGAACTTG
CGTGGTATCG TGGCACAGCA ACTTGTGCCT AAAGCGGATG GACTAGGGCG ACGTGCGGCA
ATTGAGATCT TGATCAACAC GCCAAGGGTG AGCAGTCTTA TTGCTAAAAA TGAACTTCAC
TCCCTTAAAG AGACAATGGC TAAGTCCAAT GAGCAGGGGA TGCAAACCTT CGATCAGGCG
CTGTTAAACC TCTATGTAGA AGGCGAGATT AGCTACGCCG ATGCTCTGCA CCATGCCGAT
TCACCAAACG ATCTTCGTTT GATGATAAAG CTGCGCAGTT CAGAAACTGG TGGCTCAGGC
TTTATGGAGG GGGTGACGCT AGATCTGGAT TAA
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| Protein sequence | MDVRPFLKIM VERKASDLFI TAGFPPSAKI DGELRPLGEH SFSAAQSLEF VESLMTDVQK
EEFHNTRECN FAFAAKELGR FRVSAFWQRE SPGCVMRRIE TNIPDADDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL ASLVGYRNAN ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALAFAET GHLCMATLHA NNANQALDRI
MNLVPESKHQ QLLFDLSLNL RGIVAQQLVP KADGLGRRAA IEILINTPRV SSLIAKNELH
SLKETMAKSN EQGMQTFDQA LLNLYVEGEI SYADALHHAD SPNDLRLMIK LRSSETGGSG
FMEGVTLDLD
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