| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0847 |
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| Symbol | |
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| ID | 6115081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1136884 |
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| End bp | 1138791 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641632332 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001759237 |
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| Protein GI | 170725211 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCCTC GTTCAGAACT ACTTCCTGTG AGAGATCCCG ATTTAATGGG GACTAAAGCC
CATGTGATCA CGCTATTGGG TTATCTTATC TTAATTATGG CGGTGGCACT GTCGGCGTTT
CAGATCTGGC AAGGGATCAC CTCGACCATC TCTGCAACCT ATTTCAGGCC TGTGCATCTA
AGCTGGGTGC TGGTGCTTAT TTTCCTCCAC TACCCTTTAG TTAAACATCA GCAGAGCCGC
TTCTATCTCC CAGGCAGAGT GTTAGATGTG GCGCTTTGTG GATTAACCCT GTTTGCTGCC
TATCGAATGT CGATATTTGA CTATAACGAT ATCGACCACC TTCTTTATGG CTTAGGGACT
GAAGATCTCG TGGCAGGGTG TCTATTACTA GCATTGTTGA TGGAGGGCTG TCGCCGCACT
GTTGGCTGGG TGATGGTATT GATTGCCGCG ATATTTCTCT CCTATAGTGC CTTTGGCGAT
CTGCTGCCTA GTGGCTTTGC AACTAAGTCC TATTCGCTAC AGGAGTTGAT CCAGTTCCAG
ATCTATTCAG CCAATGGCGT ATTTGGTTCA GCCTTAGGGA TCGCGGCAAC GACCGTGTTT
ATCTTTGTGC TATTCGGCGC CTTTTTAGAG GTGACAGGGG CGGGTAAGTT CTTTATCGAT
TTAGCGTTTT CCATTGCGGG TAAATATCGC GGCGGGCCGG CTAAAGCGTC AGTGTTAGCC
TCGGCTGGGC TTGGCTCTAT CTCAGGCTCT GCCATTGCCA ATACGGTGAC CACAGGCTCT
GTGACCATCC CCATGATGAA GACGTTAGGC TATAAACCTG AGCAAGCGGC GGGGATTGAA
GCGTCGGCAT CGACAGGCGG GCAGATCATG CCGCCTATTA TGGGCGCAGG TGCGTTTGTG
ATGGCGCAGT TTACCGGCGT TCCCTATAGC GAGATCATGC TGGCCTCTAT CGCACCAGCG
ATCCTCTACT TTTTCTGTAC CTTACTTTAC GTGCACTTGA TGGCGTGCAA GTTGAATTTG
CAAGCGGTGA GTCGCACCGA AGCCGTTTTG GCTGTGATGA AACAGGGCGC TCACCACTTA
ATTCCGCTGG CGTTAATCAC AACACTATTG ATGATGGCCT ACTCGCCACT CCTTGTTGGG
GTTGCTGGCT GCGCAGCTAT CATAGTGACG GCAGCGCTGC GTAAACACAG CCGTATTGGG
CTCACTAAGT TTATGCTTGG GATGAAAAAT GGCGCGCTGA TGGCGCTGCC TATCTCGGTG
GCTTGTGGCG CGGCGGGGAT TATTGTCGGT GTGGTAGGGC AAACTGGCAT AGGTTTGCAG
TTCACCCAGT TTGTGATGGA GTTTTCCGGT GGCTACATGC TAGTAGCGCT GGGGCTTATC
AGTATTGTGG CGCTGATATT GGGGATGGGA TTACCCGTTA CCGCGGCCTA TATTGTGCTT
GCTGTGATGG CGGTGCCCAT GCTGGGTGAT TTTGGACTGC CGCTATTAAC CGCTCATCTT
ATTGTGTTCT GGCTGTCGCA AACCTCCAAT GTCACGCCAC CCATTGCCCT TGCGGCATTT
GCTGGGGCGG GGGTTGCTAA CGCTAACCCG ATGAGATCTT CAATAGAAGC GTTCAAACTC
GCTGGTGGCC TGTTTATTAT CCCCATCATG ATGGCTTACA CCGACCTGCT TAATCCGGAG
GCCAGTGCGT TCGAGTTTGC CTTTGCCATC GCCCAAACAG CAGCAATTAT TATCGCGATT
GCAGTCTCTA TCGAGGGCTA CCTGTTGAGG CGTTTATCGA ATATTGAGCG AGGCGTGGCC
TTTATGACAG TGCCGCTTAT TTTGCTTAAT CCATTTGGGG CTGGGGCTAT TGGAATATTA
CTGTTAGCGG GTTTGATCGC AGTGCAGTGG AAAGGGAGGT CAAGCTAA
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| Protein sequence | MAPRSELLPV RDPDLMGTKA HVITLLGYLI LIMAVALSAF QIWQGITSTI SATYFRPVHL
SWVLVLIFLH YPLVKHQQSR FYLPGRVLDV ALCGLTLFAA YRMSIFDYND IDHLLYGLGT
EDLVAGCLLL ALLMEGCRRT VGWVMVLIAA IFLSYSAFGD LLPSGFATKS YSLQELIQFQ
IYSANGVFGS ALGIAATTVF IFVLFGAFLE VTGAGKFFID LAFSIAGKYR GGPAKASVLA
SAGLGSISGS AIANTVTTGS VTIPMMKTLG YKPEQAAGIE ASASTGGQIM PPIMGAGAFV
MAQFTGVPYS EIMLASIAPA ILYFFCTLLY VHLMACKLNL QAVSRTEAVL AVMKQGAHHL
IPLALITTLL MMAYSPLLVG VAGCAAIIVT AALRKHSRIG LTKFMLGMKN GALMALPISV
ACGAAGIIVG VVGQTGIGLQ FTQFVMEFSG GYMLVALGLI SIVALILGMG LPVTAAYIVL
AVMAVPMLGD FGLPLLTAHL IVFWLSQTSN VTPPIALAAF AGAGVANANP MRSSIEAFKL
AGGLFIIPIM MAYTDLLNPE ASAFEFAFAI AQTAAIIIAI AVSIEGYLLR RLSNIERGVA
FMTVPLILLN PFGAGAIGIL LLAGLIAVQW KGRSS
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