| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0605 |
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| Symbol | |
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| ID | 6114839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 850927 |
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| End bp | 852267 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632091 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001758996 |
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| Protein GI | 170724970 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTC GAATTAATTT CTGGGCGAAA GGCCTTATTG TCAGCCTGTT TTTCTGCAGT
TATGTCATGG CCAGTGACAG ATTTGTCACC CTTAATGATG CCTCAAGTAT TGAGCTGAAG
CAGGAGATAG GCACGGTTTT TATCAGTCAG CCAGAAGTCG CCGATTATAA AATTACAGGT
AACAATAAGT TAGTGATTTA TGGGCGTCAA TTGGGGCAGG CAAGGCTGTT TGTTTATAAC
AAGGCCAATG AAGTTATCTT ATCTCAACTG CTTCATGTGG ATATCAATCT GTCCCAAATT
CGTCGCCAGT TGAAACTATT TTACCCAGAT CTCGACCTAA CTCTGACCTC AGTGGGCGAT
AAGGTAGCGG TGCGTGGCAT CGTCTATAGC GAAGAGCAAC GTAACGATAT CTACCGTCAG
GTGGCCACGT TTTTAGGTCG CGAAAAGGTT GAGCGCTTTG ATGAGTCGGA GTTGGTGGAG
TTTAAGGACT CCTTTACCGA AGCGAATTGG CTGGCCTATG AGCGCAATTT TATCTGGCAG
GGGATCATCG AAGGGCTGAG GCTCTCTCAG ACCCAGCAGG TCAATGTGAA GATCTCCGTG
GCTCAGGTGA CGAAAGAGTT TAATGAAACC TTAGGGGTGA GCTGGTCAAC GGTTGGGCGA
AGTGTTGGTG AGTTCTCTTT TCTCGATTTT AAAGCCAGCG ATCTAAGCAC CATTATTAAT
GCCCTTGGCA AGGACAGTAT CGCTGAGGTT TTGGCTGAGC CTAATCTATC AGTGATGTCT
GGTGAATCGG CAAGCTTTCT GGTGGGGGGC GAGATCCCTG TGATATTCAG CAACAATAAT
ACCACCAACA TTACCTATAA AGAGTTTGGT ATTCGATTGG ACCTGTCTGC CAAGGTGCTC
AATAACGAGA AGATAAAGCT ACAGATGATG CCCGAGGTGA GTGCAGTCGA AGGTTTTGTT
GAAGCGGCGG GCATCAAGAT CCCTCAACTT ACCACTCGGC GTGCGATGAC CACCATAGAG
TTAGGTGATG GGGATAGCTT TCTATTAGGT GGCTTGATGA GCAGTGATGA GCTGGAAAAT
GTCAGCAAGA TCCCACTATT AGGTGACATT CCAGTTTTTG GAGCCCTGTT TAGGCAAGCG
GGAACGACTC GTAAGAAAAC CGAGCTGGTG ATTGTGGCCA CAGTGAATCT GGTAAAACCT
CTCTCTCCTA CTGAGGTACG TCTACCTAAA ATGACACCGA CTAAGTCTTT GGCACGATTC
TTCAATATCA CTGCCGACTC CGATGAGAAC AACAAGGTTA ACGTGATTCA GATGCTTAAT
CAGGGAGGAT TTATTCAGTG A
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| Protein sequence | MKSRINFWAK GLIVSLFFCS YVMASDRFVT LNDASSIELK QEIGTVFISQ PEVADYKITG
NNKLVIYGRQ LGQARLFVYN KANEVILSQL LHVDINLSQI RRQLKLFYPD LDLTLTSVGD
KVAVRGIVYS EEQRNDIYRQ VATFLGREKV ERFDESELVE FKDSFTEANW LAYERNFIWQ
GIIEGLRLSQ TQQVNVKISV AQVTKEFNET LGVSWSTVGR SVGEFSFLDF KASDLSTIIN
ALGKDSIAEV LAEPNLSVMS GESASFLVGG EIPVIFSNNN TTNITYKEFG IRLDLSAKVL
NNEKIKLQMM PEVSAVEGFV EAAGIKIPQL TTRRAMTTIE LGDGDSFLLG GLMSSDELEN
VSKIPLLGDI PVFGALFRQA GTTRKKTELV IVATVNLVKP LSPTEVRLPK MTPTKSLARF
FNITADSDEN NKVNVIQMLN QGGFIQ
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