Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0372 |
Symbol | |
ID | 6114602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 468772 |
End bp | 469650 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631857 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001758766 |
Protein GI | 170724740 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAATT GGGAAGGCAT CAGTGAATTT GTTGCAGTTG CAGAGGCCGA GAGCTTTACT AAGGCTTCAC AACGCTTGGG GATCTCCACC GCACAAGTTA GCAGGCAAGT CAGCGCATTA GAAACCCGCT TAGCCACAAA ACTGTTTCAC CGCACAACCC GAAAAGTCTC CACCACAGAG GTAGGAAGAG TCTATTACCA GCACTGCAGA CAGGTCTTAG ATGGGCTAGA TGAAGCTGAA CGTGCCATCA CCAATTTGCA AAGCTCACCG CGGGGATTAC TCAAGATCAC AGCGCCAGTA ACCTATGGAG AGATGACGAT TGCCCCACTG ATTAATGATT TTGCCGCCAA GTATCCAGAG CTAGAAGTTA AGATAAACTT AACTAATCAG AAACTTGACC TGATCGACGA GGGCTATGAT CTGGCCATCA GATTAGGCCA ACTTGAAGAC TCAAGCATGA TGGCCAAGCG ATTAAGCTCT CGCACTCAGT ATGTTTGCGC CTCACCCAGC TACCTTTCAA CTTTTGGTAT CCCTCACTCC CTTTCAGAAC TTGAGCAGCA CAACTGCTTA TTGGGAACCA TGGACTACTG GCGATTCGAA GATAATGGCA AAACTAGAAA TGTCAGAGTA AAAGGGAATC TAAGCTGTAA CAGCGGTCAC GCCTTAGTCG ACGCAGCAAT AAAGGGAATT GGAATAATTC AACTCCCTGA CTACTATTTA CAATCCTTCA TTGAGGATGG GCAACTGGTA CCGCTGCTGG AGCAAAACCG CTCACCAGAG GAGGGAATTT GGGCACTCTA CCCACATAAT CGGCATCTAT CGCCTAAGGT GCGTATGTTA CTGGATCACT TAACTCAAGC TTTGGCATCC CACAAGTAA
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Protein sequence | MFNWEGISEF VAVAEAESFT KASQRLGIST AQVSRQVSAL ETRLATKLFH RTTRKVSTTE VGRVYYQHCR QVLDGLDEAE RAITNLQSSP RGLLKITAPV TYGEMTIAPL INDFAAKYPE LEVKINLTNQ KLDLIDEGYD LAIRLGQLED SSMMAKRLSS RTQYVCASPS YLSTFGIPHS LSELEQHNCL LGTMDYWRFE DNGKTRNVRV KGNLSCNSGH ALVDAAIKGI GIIQLPDYYL QSFIEDGQLV PLLEQNRSPE EGIWALYPHN RHLSPKVRML LDHLTQALAS HK
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