Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0367 |
Symbol | |
ID | 6114597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 463369 |
End bp | 465066 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641631853 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001758762 |
Protein GI | 170724736 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGAAG GGCAAATTAA TGGTCACGAT TATGATGTGA TTGTTGTTGG CTCCGGTGCT GGTGGTGCCA TGGCAGCTTA CACATTAACA AAATCGGGAC GTAAAGTGCT GATGTTAGAG GCGGGGCGAG ACTACGACCC AAAAACAGAA ACCCCCATGT TCAAGAGTAA CTTTGATGCA CCACTGCTCG GCGCGGGGAA CTCAGATAAA GACTTTGGTT TTTATGATGC AACTGTTGAT GGCGGCTGGG AGGTACCGGG AGAGCCCTAC ACTAAAGGTG AGGGGAGTGA GTTTCTCTGG TGGCGTGCTC GTATGTTAGG GGGGCGAACT AACCATTGGG GTCGCTACTC ACTGCGATTT AGTGAACATG ATTTTAAAGG CTTTAGTCGT GATGGTTTAG GTGCTGACTG GCCATTCGAA TACTGGGATC TGGCGCCTTG GTATGATGAG ACCGAAGCCT TGGTTGGGAT CTGCGGTACC AATACAGGTT TAGATGATAT GCCTGATTCT CCTGAGGGCG TATTGCAGCC ACCACCTAAA CCGCGTGTGC CTGAGTTGCT TGTCTCGGCT GCGGCGAAAA AGTTGGGTAT CCCCACTGCG CCTATGCATC GTGCTGTTCT CACTCGTCCA AAAGATGATC GCCAAGCGTG TTTCTATGCT ACCCCTTGTG GCCGTGGTTG CTCCATTGGC GCTGCATTTC AAACGACAAC CTCATTGATC CCGATGGCGC AAGCAACGGG GCTGCTCACT GTGATCACCG ATGCCATGGT GAAAGAGGTC AATGTCGATG AGAAAGGCAA GGTCAATGCC CTGACCTATA TCGACAAGAA AACCAAACAA GCCCATAGAT TGGATGCCAA GGTGATCATT CTTGCGGCGA GTGCCTGTGA GTCTGCACGT ATACTGCTTA ATTCTAAAAG TGAATCACAT CCAAATGGAT TAGCTAACTC AAGTGGCCAT GTGGGCAGAA ATATTATGGA CTCAACTGGT GTGAGCTATG GCGCCCATAT CCCTGCGCTT GAGGGACGTC CTAAATATAA TGAAGATGGG CATACGGCGA ATCATCTGTT TATCCCCTGG TGGGGACATA AGGTACAGGA GAAAAAGGCG ATGGCCTTTC CTCGTGGTTA CCATTTCGAG ATAGGCTCTG GCTTTAGGGC TCCGAGCTCC TGGGTGAGTG GCGATCTCGA TGGTTATGGA AAGCCGTTAA AAGAGATAGC AAAGCAAGCC TATGGCTCCT ATGTGGGATT GGCACTGAGG GGAGAGATGC TGCCCAATGA TGATTGCTAT ATGGAGATCG ACGAGGATGT GAAGGATAAA TGGGGCATTC CTGTGGTCAA GTTTCATTGG AAATGGTCTC AGCACGAGCT TAAACAGGTT GAGCACGGTT TAAAGACCGC CCGTCAGATC CTTGAAACCA TGGGGGCTAA GTTCGATAAA CCTCTACCCA AAGCGGAAGA TGCGATCCTA AAGGGGGGGC AGATCATTCA TGAGGTAGGA AGCACCCGTA TGGGAGACTC ACCGACAGAG TCAGTGACCA ATCAATGGGG ACAAACCTGG GATTGCAGTA ATCTGTTTGT GATGGATGCT GGTGTGTTTG CATCTAACCC CCATAAAAAC TGCACCTTAA CCATTATGAC ATTAGCCATG AGAAACAGCA CTTGGCTGGC GAGACAGTTA GATAAGGGGG AGTTGTAA
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Protein sequence | MMEGQINGHD YDVIVVGSGA GGAMAAYTLT KSGRKVLMLE AGRDYDPKTE TPMFKSNFDA PLLGAGNSDK DFGFYDATVD GGWEVPGEPY TKGEGSEFLW WRARMLGGRT NHWGRYSLRF SEHDFKGFSR DGLGADWPFE YWDLAPWYDE TEALVGICGT NTGLDDMPDS PEGVLQPPPK PRVPELLVSA AAKKLGIPTA PMHRAVLTRP KDDRQACFYA TPCGRGCSIG AAFQTTTSLI PMAQATGLLT VITDAMVKEV NVDEKGKVNA LTYIDKKTKQ AHRLDAKVII LAASACESAR ILLNSKSESH PNGLANSSGH VGRNIMDSTG VSYGAHIPAL EGRPKYNEDG HTANHLFIPW WGHKVQEKKA MAFPRGYHFE IGSGFRAPSS WVSGDLDGYG KPLKEIAKQA YGSYVGLALR GEMLPNDDCY MEIDEDVKDK WGIPVVKFHW KWSQHELKQV EHGLKTARQI LETMGAKFDK PLPKAEDAIL KGGQIIHEVG STRMGDSPTE SVTNQWGQTW DCSNLFVMDA GVFASNPHKN CTLTIMTLAM RNSTWLARQL DKGEL
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