Gene Swoo_0367 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0367 
Symbol 
ID6114597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp463369 
End bp465066 
Gene Length1698 bp 
Protein Length565 aa 
Translation table11 
GC content50% 
IMG OID641631853 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001758762 
Protein GI170724736 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAAG GGCAAATTAA TGGTCACGAT TATGATGTGA TTGTTGTTGG CTCCGGTGCT 
GGTGGTGCCA TGGCAGCTTA CACATTAACA AAATCGGGAC GTAAAGTGCT GATGTTAGAG
GCGGGGCGAG ACTACGACCC AAAAACAGAA ACCCCCATGT TCAAGAGTAA CTTTGATGCA
CCACTGCTCG GCGCGGGGAA CTCAGATAAA GACTTTGGTT TTTATGATGC AACTGTTGAT
GGCGGCTGGG AGGTACCGGG AGAGCCCTAC ACTAAAGGTG AGGGGAGTGA GTTTCTCTGG
TGGCGTGCTC GTATGTTAGG GGGGCGAACT AACCATTGGG GTCGCTACTC ACTGCGATTT
AGTGAACATG ATTTTAAAGG CTTTAGTCGT GATGGTTTAG GTGCTGACTG GCCATTCGAA
TACTGGGATC TGGCGCCTTG GTATGATGAG ACCGAAGCCT TGGTTGGGAT CTGCGGTACC
AATACAGGTT TAGATGATAT GCCTGATTCT CCTGAGGGCG TATTGCAGCC ACCACCTAAA
CCGCGTGTGC CTGAGTTGCT TGTCTCGGCT GCGGCGAAAA AGTTGGGTAT CCCCACTGCG
CCTATGCATC GTGCTGTTCT CACTCGTCCA AAAGATGATC GCCAAGCGTG TTTCTATGCT
ACCCCTTGTG GCCGTGGTTG CTCCATTGGC GCTGCATTTC AAACGACAAC CTCATTGATC
CCGATGGCGC AAGCAACGGG GCTGCTCACT GTGATCACCG ATGCCATGGT GAAAGAGGTC
AATGTCGATG AGAAAGGCAA GGTCAATGCC CTGACCTATA TCGACAAGAA AACCAAACAA
GCCCATAGAT TGGATGCCAA GGTGATCATT CTTGCGGCGA GTGCCTGTGA GTCTGCACGT
ATACTGCTTA ATTCTAAAAG TGAATCACAT CCAAATGGAT TAGCTAACTC AAGTGGCCAT
GTGGGCAGAA ATATTATGGA CTCAACTGGT GTGAGCTATG GCGCCCATAT CCCTGCGCTT
GAGGGACGTC CTAAATATAA TGAAGATGGG CATACGGCGA ATCATCTGTT TATCCCCTGG
TGGGGACATA AGGTACAGGA GAAAAAGGCG ATGGCCTTTC CTCGTGGTTA CCATTTCGAG
ATAGGCTCTG GCTTTAGGGC TCCGAGCTCC TGGGTGAGTG GCGATCTCGA TGGTTATGGA
AAGCCGTTAA AAGAGATAGC AAAGCAAGCC TATGGCTCCT ATGTGGGATT GGCACTGAGG
GGAGAGATGC TGCCCAATGA TGATTGCTAT ATGGAGATCG ACGAGGATGT GAAGGATAAA
TGGGGCATTC CTGTGGTCAA GTTTCATTGG AAATGGTCTC AGCACGAGCT TAAACAGGTT
GAGCACGGTT TAAAGACCGC CCGTCAGATC CTTGAAACCA TGGGGGCTAA GTTCGATAAA
CCTCTACCCA AAGCGGAAGA TGCGATCCTA AAGGGGGGGC AGATCATTCA TGAGGTAGGA
AGCACCCGTA TGGGAGACTC ACCGACAGAG TCAGTGACCA ATCAATGGGG ACAAACCTGG
GATTGCAGTA ATCTGTTTGT GATGGATGCT GGTGTGTTTG CATCTAACCC CCATAAAAAC
TGCACCTTAA CCATTATGAC ATTAGCCATG AGAAACAGCA CTTGGCTGGC GAGACAGTTA
GATAAGGGGG AGTTGTAA
 
Protein sequence
MMEGQINGHD YDVIVVGSGA GGAMAAYTLT KSGRKVLMLE AGRDYDPKTE TPMFKSNFDA 
PLLGAGNSDK DFGFYDATVD GGWEVPGEPY TKGEGSEFLW WRARMLGGRT NHWGRYSLRF
SEHDFKGFSR DGLGADWPFE YWDLAPWYDE TEALVGICGT NTGLDDMPDS PEGVLQPPPK
PRVPELLVSA AAKKLGIPTA PMHRAVLTRP KDDRQACFYA TPCGRGCSIG AAFQTTTSLI
PMAQATGLLT VITDAMVKEV NVDEKGKVNA LTYIDKKTKQ AHRLDAKVII LAASACESAR
ILLNSKSESH PNGLANSSGH VGRNIMDSTG VSYGAHIPAL EGRPKYNEDG HTANHLFIPW
WGHKVQEKKA MAFPRGYHFE IGSGFRAPSS WVSGDLDGYG KPLKEIAKQA YGSYVGLALR
GEMLPNDDCY MEIDEDVKDK WGIPVVKFHW KWSQHELKQV EHGLKTARQI LETMGAKFDK
PLPKAEDAIL KGGQIIHEVG STRMGDSPTE SVTNQWGQTW DCSNLFVMDA GVFASNPHKN
CTLTIMTLAM RNSTWLARQL DKGEL