Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0213 |
Symbol | |
ID | 6114436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 263314 |
End bp | 265644 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641631694 |
Product | TonB-dependent receptor plug |
Protein accession | YP_001758609 |
Protein GI | 170724583 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000121403 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAACGAAA AAGTAAAATA TAATAACTAT AGCAACAGCA TTATTGTACT GTCTTTGTTA TTCAATGCGC CTGTATTTTC TGAAGAAAGT GATAAAAAAG AGAAAAGCCA AACACTCGAA GTGATTACGG TGACCGCGCA AAAAAGAGTT GAATCACTAC AAGAAACACC TATCGCAGTG ACCGCATTTA CCGCCGATGG CCTTGAAAAA ATGCAAGTTG GCAATATTGC AGAAATAGAA AATTTCACCC CCAATTTAGT GTTTGATACC TCATCTCCAA TAGGTGGCTC ATCAACCAGT GCGGCCGTTT TCATACGCGG GATCGGCAAT ACAGACTTCA GTTTAACCAC AGATCCAGGT GTAGGGACGT ATATTGATGG CGTATATGTC TCTCGTTCTA TCGGTGGCGT ATTAGATCTC CTTGATGTTG AGAGAATAGA GGTGCTGAGA GGACCACAAG GCACCCTATT TGGCCGTAAT AGTATTGGTG GGGCTATTAA TATTACTACG CGTAAGCCAT ATGATGAGCT TGCTGGCCGT TTAGATCTCA CTTTGGGTAG CTTTAATCGA ACTGATGTTC GTGGCTCAAT TGATATTCCT TTTACAGACG AATTACTGTC CACATTTGCC TTTTCAAGTA AACGCAGAGA TGGCTTTGTT GAACGCCCGC TCATAGGCGA TGAACTCGGT AATGAAGACC AACTTGCGTT TCGTGGAGCC TTATATTACG AACCCAATGA TGAGTGGAAT TTTCAACTCT CCTTTGACCA TTCAGATATA GACGAAGAGA GTGCAGCTAA TGTCGCCGTG GGCTTTACCC CTGGTGCAGG CACAATAGGT TGGGCACTGG CGACCTATCC AACATTATCA CCAGATGCGG CAATCGTTGC AGGACTTAAA GACTTAGACA AATACATAAC CAAAGATGAT AAAGACGTAT CCTATGGAAC ATACAACAAT GGCAGCAGCG CAACGGTAGA TGGAGCCTCA TTTGTCGCCA ATACTCATCA AGACAATTTT GACCTTAAAT ACACTGCAGC ATATCGTAGA ACGAAGGCTG CATTCCATGC AGATGCCGAT AACACGCCAT TTCAAATTAC CGAGATTTCA AACCCAGATT ATTATCATAA GCAGATTAGT CATGAGCTTC AGTTCTTGGG CACCGCTATG GATGACCAAA TCAAGTACAT TGCTGGGGTC TATTACTTTG ATGAAAGCGG TACTGATAAT GTGTTTGTTC CACTGCACCT ACCAACCCCA GATTTAAGCG CTGGTTTCCC TGCTGGGTTA AATAACTATG CCGACGTTGA GAACTCTAGT CTTGCTGAAT ATTTACAAGC AACTTGGGAT ATTAACGACA CATTCTCAGT CACGGCAGGT GTTAGACACA CACTAGATAA AAAGCAATTT GATTATACCC AGTACCTTGC TGCTGACATT CAAGGCAATC CGTTACCGTT TTTCCCTGGT GCTGTTGATG AAACAGGTAC ATTTCGCCCC GGACTCTCAC CATTAGTGGG CAATGGCAGT GGCTCTATTT CTGATAATTT TGAGCAGACA ACATTTAAGC TTGGTGTTGA TGCCATATTA GATGACGGCA CTCTTCTGTA TTACAGCTTC TCTCAAGGAT TCAAAAGCGG AGGGTTTGTT TTACGCTACG TAGAATCGGT AGCCGCACCT CGTACCTTTG AACCAGAAAC CTTAGATGCA CATGAAATAG GAATCAAATG GCAAAGTGAT AATGAGCGTA TCCGAGTCAA CGGCGCGGTG TTCTATTCAG ACTATCAGGA TGCACAAGTC ACCTTTTTTG ACAAACTCGG CGGGCCAATT ACAGCCAACG CTGGAGAGAT TGACATTAAA GGCGTAGAGC TTGAGATAAC CGCCTTAATC ACAGACGATC TCATTCTTGA TATTGGCTAC GGCTACATTG ATGCAGCATA CAATAACATC AATCCCGTTG AAGGTTTATC ATTGACCTTA GATAAGTCCG CTAAGCTAGT AAATACACCT GAGAACTCAT TACACATTGG TTTAGATTAC AGTCTTTACT TCGATGAAAG CGATATCGCT TTCAGAGTTG ATTATGCGTA TACCGATGAT GTATTTAATG ACTCTCAAAA CTCAAAATTT CTATTTCAAG AAGCCCACGA CATGTTTAAT GCTTCAATTA GATATAATTT AAATGAAAGT GTTGGCTTCG TTGCTTTCGT CAATAACCTA ACCGATAAAA GAGTTATTAA AAGTGGCAAC TCTAATTTCG GCCTTGGTTT TCACTCTGCA AGTTATAATA AACCAAGAGA GTTTGGCCTA GCCGTTAAAT ACACTTTCTA A
|
Protein sequence | MNEKVKYNNY SNSIIVLSLL FNAPVFSEES DKKEKSQTLE VITVTAQKRV ESLQETPIAV TAFTADGLEK MQVGNIAEIE NFTPNLVFDT SSPIGGSSTS AAVFIRGIGN TDFSLTTDPG VGTYIDGVYV SRSIGGVLDL LDVERIEVLR GPQGTLFGRN SIGGAINITT RKPYDELAGR LDLTLGSFNR TDVRGSIDIP FTDELLSTFA FSSKRRDGFV ERPLIGDELG NEDQLAFRGA LYYEPNDEWN FQLSFDHSDI DEESAANVAV GFTPGAGTIG WALATYPTLS PDAAIVAGLK DLDKYITKDD KDVSYGTYNN GSSATVDGAS FVANTHQDNF DLKYTAAYRR TKAAFHADAD NTPFQITEIS NPDYYHKQIS HELQFLGTAM DDQIKYIAGV YYFDESGTDN VFVPLHLPTP DLSAGFPAGL NNYADVENSS LAEYLQATWD INDTFSVTAG VRHTLDKKQF DYTQYLAADI QGNPLPFFPG AVDETGTFRP GLSPLVGNGS GSISDNFEQT TFKLGVDAIL DDGTLLYYSF SQGFKSGGFV LRYVESVAAP RTFEPETLDA HEIGIKWQSD NERIRVNGAV FYSDYQDAQV TFFDKLGGPI TANAGEIDIK GVELEITALI TDDLILDIGY GYIDAAYNNI NPVEGLSLTL DKSAKLVNTP ENSLHIGLDY SLYFDESDIA FRVDYAYTDD VFNDSQNSKF LFQEAHDMFN ASIRYNLNES VGFVAFVNNL TDKRVIKSGN SNFGLGFHSA SYNKPREFGL AVKYTF
|
| |