| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0186 |
|---|
| Symbol | |
|---|
| ID | 6114409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 225146 |
|---|
| End bp | 226342 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641631667 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001758582 |
|---|
| Protein GI | 170724556 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGGCTT TTTACCACAG ATGTCGCTTT CTATTTCTGC CACTCTTTGT TACAGCCCTG
TCGCTGGCTA TCTTTCAGTT TTCTCAACCC CGCTTAAATG CTTGGCACGA AACCATTGCG
CAGCTCCCTT TTTGGCTGCT ATCCATTAGC ATATTGATAG CCATTCAATT TAACCGCAGC
CGTTTAGCCT ACCTTGCAGC GCTATTGCAA GCCTATTATC TATTTACTAG CTCCGCTCAA
TTTACTATTG AGGGGCTAGA TAATTATTCA GAACAGCTTC TACTTGGCGG CGTTTTCACT
ATCACATGGT TTGCTTTCAT TAAGGACAGA GGCCTTCTAT CTCCCCACAG TCTAATACGT
ACTTTAGGCA TTATACTCAG CTTCAGCGCT GCTTTTGGCT GGCAGTGGGC CAATGTAACT
TTCGATAATG ATCTTAAGCT CTACCTCCCC GAATTTATTA CCATAGAGAT CCGCACATTA
ATCCTACTTT CCCTATGTAC GCTACTAGTA TTTCTACGGG GGCTTTGGTT ATCAAATCTA
GTCAGTACCG CTATCGTCAT TACTTTGCTC CTATGGGGTG TGAACTTTTT ACTGCCAAAC
TATCTCCCAA GTGCAGTATC TCTTTCAATG TTAGCCATTA TCTATCTGCT AACTGTACTG
GCCGACTCCT ATTTTCTTGC CTACCGTGAT GAGTTAACAG GCTTAGCCTC TCGGCGAGCA
CTCTATAATT TAGTGCTCTC TTTAGGACGA AAATATACAG TTGCCATGCT GGATATCGAT
CACTTTAAAA AGTTTAACGA CACCTATGGC CATGATGTTG GCGATCAAGT ATTGAAGTTA
GTCGCCAGTA AGATTGCAGA GGTCACTGGC GGTGGCAAGG CGTTTAGGTA TGGTGGCGAG
GAGTTCACTA TAGTGTTCTC TCGCAAAGAT CTCTCATCGG TATTACCTCA CCTAGAGAAG
GTGCGTAAAG AGATAGAGAA GTATGACATC GTACTGCGAG ATGAGAAGCG TAAGAAACAA
ACAAAGGCAA AACGAAATAA AGCTCAGGAA AGAAACAGTA AACGAGTCGT CAATGTCACC
ATCTCCATCG GAGTCGCCGA CCATCAACAC CGCGAGAGTT TCGAGCAAAC CATGAAAGAA
GCCGATAAAG CCCTCTACCG CGCAAAGAAG AAAGGGCGTA ACCAACTATC AGAGTAA
|
|---|
| Protein sequence | MSAFYHRCRF LFLPLFVTAL SLAIFQFSQP RLNAWHETIA QLPFWLLSIS ILIAIQFNRS
RLAYLAALLQ AYYLFTSSAQ FTIEGLDNYS EQLLLGGVFT ITWFAFIKDR GLLSPHSLIR
TLGIILSFSA AFGWQWANVT FDNDLKLYLP EFITIEIRTL ILLSLCTLLV FLRGLWLSNL
VSTAIVITLL LWGVNFLLPN YLPSAVSLSM LAIIYLLTVL ADSYFLAYRD ELTGLASRRA
LYNLVLSLGR KYTVAMLDID HFKKFNDTYG HDVGDQVLKL VASKIAEVTG GGKAFRYGGE
EFTIVFSRKD LSSVLPHLEK VRKEIEKYDI VLRDEKRKKQ TKAKRNKAQE RNSKRVVNVT
ISIGVADHQH RESFEQTMKE ADKALYRAKK KGRNQLSE
|
|---|
| |