| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4833 |
|---|
| Symbol | |
|---|
| ID | 6113823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5331204 |
|---|
| End bp | 5332487 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641624645 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001751678 |
|---|
| Protein GI | 170723990 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.874316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTTCGTT TAAACGCTGT ACGCGCAAGC CACTTCCTGC CTTCACTGAT CCTCTTGCTG
GCAGGGCTTG CGGCGGCATA CGTGAGAGAC CTCAGCGTCT TCTTCACATC ACTGTTCAAC
GTCCTGCCCA CCTTGGTCCT GCTGCTGGGC GGCGCCTACT GCGCGGTATA CCGTCGCCAG
CGCGAGCTGT TCTTGATGGT CACGGTGTAC ATCGCCTATT TCCTGCTCGA TACCCAGACT
GACTACTACC GTGACAACGG CCGCGTGCGC GAGGACGCAG CGGTGATCTT CCATCTGGTG
TGCCTGTTGC TGCCTGCATT GTTCGGCCTG TTTGGCGCCT GGCAGGAGCG CACCCACCTG
GCCCAGGACC TGCTTGCCCG GTTTGCTGTG CTGTTCGCGG TGGGTAGCGT GGCAGTGGCG
CTGGAGCAAA GTTTTCCCCA GGCACTGCTG GCCTGGTTGG CGGAAATCCG TTGGCCGTCG
CTGCATGGGC AGTGGATGAG CCTGATACAG ATGGTCTACC CGTTGTTCAT CGGTGTCTTC
ATGCTGCTGG TGGTGCAATA CCTGCGTGAG CCAAGGCCCC TGCATGCAGC CCAGATCATC
GGGCTGATCG GTATCTTCTG GATGCTGCCC AAAACGTTCA TCCTGCCGTT CACGCTGAAC
ATCATGTGCA GCCAAGTGAT GTTGATGATC GCTGCGGCGG TCTCCCACGA GGCCTACCAG
ATGGCCTTCC GTGACGAACT GACCGGCCTG CCTGGGCGGC GCGCACTGAA CGAACGCATG
CAGCGCCTGG GGCGCAACTA CGTGATTGCC ATGACCGACG TCGATCATTT CAAGAAATTC
AACGACACCC ACGGCCACGA TGTCGGTGAC CAGGTATTGC GCCTGGTCGC CAGCCGGCTG
TCGAAGGTCA CCGGTGGTGG GCGCGCCTAC CGCTACGGTG GCGAGGAGTT TGCTCTGGTG
TTCGCCGGTA AGACCGCCGA TGAGTGCGTG CCGCATGTGG AAGCCGTGCG GGAGATGATC
GCCAATTACA CGATGCAGCT GCGTGACCAG AACAATCGGC CACAGGACGA TTCCGCCGGC
CGTCAGCGCC GCAGCGGCAG TGGGGCAGGC ACAGTATCGG TGACCATCAG TATCGGCGTC
GCTGAACGCC TTATCGAGCA CCGCAACCCC GAAGAGGTGC TCAAATCTGC CGACCAGGCG
CTGTACAGCG CCAAAGGTGC CGGCCGCAAC TGTGTCATGG TTTACGGCCA ACAATCACGG
CGCGGGGCCG TTCGAACTGC GTGA
|
|---|
| Protein sequence | MFRLNAVRAS HFLPSLILLL AGLAAAYVRD LSVFFTSLFN VLPTLVLLLG GAYCAVYRRQ
RELFLMVTVY IAYFLLDTQT DYYRDNGRVR EDAAVIFHLV CLLLPALFGL FGAWQERTHL
AQDLLARFAV LFAVGSVAVA LEQSFPQALL AWLAEIRWPS LHGQWMSLIQ MVYPLFIGVF
MLLVVQYLRE PRPLHAAQII GLIGIFWMLP KTFILPFTLN IMCSQVMLMI AAAVSHEAYQ
MAFRDELTGL PGRRALNERM QRLGRNYVIA MTDVDHFKKF NDTHGHDVGD QVLRLVASRL
SKVTGGGRAY RYGGEEFALV FAGKTADECV PHVEAVREMI ANYTMQLRDQ NNRPQDDSAG
RQRRSGSGAG TVSVTISIGV AERLIEHRNP EEVLKSADQA LYSAKGAGRN CVMVYGQQSR
RGAVRTA
|
|---|
| |