| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3254 |
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| Symbol | |
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| ID | 6112206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3592074 |
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| End bp | 3594437 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641623039 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001750111 |
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| Protein GI | 170722423 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.789135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAGC CAATAATGGG TTTCACCCAT AACCACTACC AGCTTGAAGT CGACCAGCTT
GCTGTTGAGC TTGATGTACT GTCGTTCAAA GGTGAAGAGT GGCTGAGCAA ACCGTTCAAG
TACACCGTGG TATTCACTTC CCCGGAGCAG GATATCGAGG CTGCGCAGAT CCTCGGGAAG
GATGCCAGCT TCTATCTGGG CAAGTCTCAA CCCACCGTCC AGCTCTCAAT GATTAACGCT
GCTTCACGTA CGCTGCATGG CGTGATCACC GGTTTCAAGC GTGTCTCCGG CTCCCGGGAT
GAAGCCCGCT ACCAAGTCAC ACTCGAAGCG CACCTGGCAT TGCTCGGGCG TGGCAAGCAG
TACCGGATCT ACCAGCATCA GTCGGTGCCG GAAATCGTTG AAAGTGTTCT CCGTAGTCGC
CACCAGTTCG AAGGGCAGCA CTTCTTGTTT GACCTGGCGC GCGAGTATCC CAAGCGTGAA
CAGGTCATGC AGTACGGTGA GAGCGATCTG GCCTTCATCA GCCGCCTGCT GGCGGAGGTC
GGCATCTGGT ATCGCTTCAC CCACGATGAT CGCCTTTCCC TCGATGTGGT CGAGTTTCAC
GACCATCAAC GCCACTACCA GTTTGGACTC ACGCTGCCGC ATCGCCCGCT GTCGGGTTTG
ACCAGCAATG GGCAGGAGGG CGTATGGGCG CTCCAAGTTG AGCATCAGGT GGTGGAGCAG
CACATCAATG TGCGGGCTTA TCACCACCGG GACGCGGCCG CCTTCCTGGA TGGTGAGGTT
GATCACAGCC GAGGTGCCAC CACCACCTAT GGCGAAGGCT ATCACTACGG CGAACCCTAT
ACCGCGCTGG GTGACGCCAT TGACCAGGAT GAGGACCTGC TCAGCGAAAG TGGCTATTTC
TATGCGCGCC TGAATCATGA ACGCTTTCTC AACGACCAGA CGCGTTGCAA TGGCGTTAGC
AGCAGCGTGA CGCTTGCCCC AGGGCAAGTG CTGACGGTCT CTGACGGGGC GCCACAGGTG
TTCGAGCCTG GGGTGGTCAT TACACATTTG ACCGTCGAGG CAGCACGCGA CCGGAGCTTG
GAGGCCAAGT TCGACGCGAT TCCCTACTCG GAGGCGATAG GCTTTCGGCC AAAATTGCTG
GGCAAGCCAC AGATTGCCGG TACGGTGCCG GCGCGGGTCA CCAGTACGCA AAAGAACGAT
CCTTATGGCC ATATCGATAT GGAGGGCCGC TACCGGGTCA ATTTCCTGTT TGACCGGGAC
ACCTGGCGTG CAGGCGAGGA GAGTGTCTGG CTACGACTGG CACGGCCTTA CGCGGGTGAC
ACCCATGGCC TGCACTTGCC GTTGATCTGC GGTACCGAAG TGGCGGTGGC GTTTGAGCAA
GGCGATCCGG ACCGCCCCTA CATCGCTTAT GCCTTGCACG ACAGTGAACA TCCCGACCAC
GTGACGCTGC GCAACTACAA ACGCAATGTG CTGCGGACTC CGGCCAACAA CAAGTTCCGG
CTGGACGATA CGCGTGGACA GGAGCACATC AAGCTCAGTA CCGAGCACAG CGGCAAGAGC
CAGCTCAATC TGGGGCATGT GGTTGACGCT GAGCGCAAAC CCCGAGGGGC GGGGGCAGAA
CTACGCACCG ATGGGCATGT CGCCATGCGC GGTGGCAGCG GCATCTTCAT CAGTGCTGAT
ACGCAGCCAG GGGCCAAGGG GCACATGCTC GAAATGGCTG CTGTCCTGGA GCGCCTGGAT
CAGGCCAAAG AGCAGTTGGA AGGGCTTTCG GATGACGCTC AGGCGTGCAA GGCGGAGCCT
GCGGATGTCC AGGCCCAGCT GGACCTGCTT AAGCAAGATC TGGAACAGCT CAAATCCTCG
GTCCTGATAC TGAGCGCCCC TCAGGGGATC TCGCTAACCA GTGGCGGCCA TCTTCAGCTG
GCAGCGCAAA AGAACCTGAT GCTCAACGCC GGTGGTGAGG CCGATGTCAG CGTGGTCAAG
CGGTTGTTTG TTGGGATAGG ACAGGGGCTG AGTGTGTTTG TGCGCAAATT GGGCATCAAG
CTCATTGCCA ACCAAGGGCC AGTCAGTATC CAGGCGCAGA ACGACGCATT GTCGCTAATT
GCACGGCATG GTCTGGAAAT TTGTAGTACT GAAGATGAGA TCCGGATCAC GGCGAAGAAG
AAGATTACAC TCAATGCGGG TGGGAGTTAT ATCGCGATAG ATGCGTGCAG TATTGAGTCT
GGGACGGAAG GCGATTGCCT AATCAAGGCT GCAAGCTTCG AATATTTAGA AGAGCCTGCA
AAGAAGATGA TAGATGTTCC GTCCATGCCT CCTTTGGCGA ATCATGATCC AGAATCGCTA
AATACCACTG TATTTTCAGG TTAG
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| Protein sequence | MTKPIMGFTH NHYQLEVDQL AVELDVLSFK GEEWLSKPFK YTVVFTSPEQ DIEAAQILGK
DASFYLGKSQ PTVQLSMINA ASRTLHGVIT GFKRVSGSRD EARYQVTLEA HLALLGRGKQ
YRIYQHQSVP EIVESVLRSR HQFEGQHFLF DLAREYPKRE QVMQYGESDL AFISRLLAEV
GIWYRFTHDD RLSLDVVEFH DHQRHYQFGL TLPHRPLSGL TSNGQEGVWA LQVEHQVVEQ
HINVRAYHHR DAAAFLDGEV DHSRGATTTY GEGYHYGEPY TALGDAIDQD EDLLSESGYF
YARLNHERFL NDQTRCNGVS SSVTLAPGQV LTVSDGAPQV FEPGVVITHL TVEAARDRSL
EAKFDAIPYS EAIGFRPKLL GKPQIAGTVP ARVTSTQKND PYGHIDMEGR YRVNFLFDRD
TWRAGEESVW LRLARPYAGD THGLHLPLIC GTEVAVAFEQ GDPDRPYIAY ALHDSEHPDH
VTLRNYKRNV LRTPANNKFR LDDTRGQEHI KLSTEHSGKS QLNLGHVVDA ERKPRGAGAE
LRTDGHVAMR GGSGIFISAD TQPGAKGHML EMAAVLERLD QAKEQLEGLS DDAQACKAEP
ADVQAQLDLL KQDLEQLKSS VLILSAPQGI SLTSGGHLQL AAQKNLMLNA GGEADVSVVK
RLFVGIGQGL SVFVRKLGIK LIANQGPVSI QAQNDALSLI ARHGLEICST EDEIRITAKK
KITLNAGGSY IAIDACSIES GTEGDCLIKA ASFEYLEEPA KKMIDVPSMP PLANHDPESL
NTTVFSG
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