Gene PputW619_2445 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_2445 
Symbol 
ID6111398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp2716176 
End bp2717231 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content63% 
IMG OID641622240 
ProductTPR repeat-containing protein 
Protein accessionYP_001749314 
Protein GI170721626 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0758357 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACAC GCCACCGCTA CCTGATCGCT GTGTTACTGC TGATTCTGGT ATCAGTCGGC 
ATCGTCTACC TGCGCCGGGA TACCCCGCCA GCACAACCGA CACTTCCCCC GCACAGCTAC
GCCAAAGCCC TGCGCCAGGC TCATGAAGGC CAACCGGGCG CCGCGCGGGT GCTCTACCAG
CAACTGCAAC GCAACGACCT GGCGCCGATC CGCCGCGCAG CCTTGTACGC AGAGCTGCCT
AACTACCCTT CACCACAAGC GCTGAAACTG GCCCGCATGG ACCTGGAAAA CGATGAACCC
TTGGTCCGTC GTGCAGCGAT CGCCAGCATC CGCCGCCTGC TGCCTGCGGC ACAGCGCAGC
CTGGTTCTTG GCCCCCTGCT GGATGATGCC GAGCAAAGTG TACGCTTCGC CGCCGTCGAT
GCCTTGCTTG GCCTGGACCC CGACGCCATT GGTCTGTACT TCGGCCCACT GCAGGCCGCA
CTGGAGCAAT ACCAGCAAAC GCTGGAACAA CAGCCCCAGG ATGCCGCGGC CCAGGTACAC
CTGGCACGCC TGTATCTGCA TGAGAATGAG TACACAGAGG CTGCATCCGC CCTGCAACGT
AGCCTCGCGT CAAACCCGGA CAACCTCGAC GCCCTGGCGA CCCAGGTACG CTTGCTCGAA
CGTCAAGGCC ACCACGACCA GTCCCGGCAG GTACTGGCAC AGGCACTGGC GCTGCGCCCG
GATTCGGCCT TCCTGCAACA CGAACTGGGG CGCTGGCTGA TCCGCCATGG CCAGCGCGAA
TTCGCCCTGC TCGCTTTGTC CCGCGCAGTC GAGCTGGAGC CGGACAATGC CGACTATCGC
TATAGCCTGG CAGTGACCCT GCACGACCTG GAACAGTCCG ATGCAGCGCA AAAGCAGCTC
GAAACCCTGC TCAGCCGGCA ACCGGCAAAT CGCCGGGCGC GGGTGTTGCT GATTCAATAC
TGGAAAGAAA CAGGCCAGTT GCAGAACGTT CAGGTGCTGC TTGCCGAACT GGAGCGGCAA
AACCCTGACG ATCCGTTTCT GCAGCAGGGG CTTTAG
 
Protein sequence
MPTRHRYLIA VLLLILVSVG IVYLRRDTPP AQPTLPPHSY AKALRQAHEG QPGAARVLYQ 
QLQRNDLAPI RRAALYAELP NYPSPQALKL ARMDLENDEP LVRRAAIASI RRLLPAAQRS
LVLGPLLDDA EQSVRFAAVD ALLGLDPDAI GLYFGPLQAA LEQYQQTLEQ QPQDAAAQVH
LARLYLHENE YTEAASALQR SLASNPDNLD ALATQVRLLE RQGHHDQSRQ VLAQALALRP
DSAFLQHELG RWLIRHGQRE FALLALSRAV ELEPDNADYR YSLAVTLHDL EQSDAAQKQL
ETLLSRQPAN RRARVLLIQY WKETGQLQNV QVLLAELERQ NPDDPFLQQG L