| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1882 |
|---|
| Symbol | |
|---|
| ID | 6110833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 2105008 |
|---|
| End bp | 2110242 |
|---|
| Gene Length | 5235 bp |
|---|
| Protein Length | 1744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641621677 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001748754 |
|---|
| Protein GI | 170721066 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.44453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGTC AGCCGTTCAC CGATGACTCC ACCAACGCCT TGATTGCCAG CCGCTTGCCC
GCCTGGCTGA CCGAACTTCC GTCCGACACC CTCCACAGCT TGCACGAGAG CCAGCAGCGA
CAGCAGCAGC TACAGCATCA GTTGCACGAA TGGCTGGCGC GGATCACTCC ACTCGATGCA
TTTGCCGAAC CGCTGCTGCA ACAAGCTCTG CAGGCGGAGC ATCAACTTAC CATCGATGTG
CGCCGGGCCA CGCTACGGCG CAGGACCCTG CAGCGATATC CCTCGCATGT TGCGCAGGTG
CCGGATGGGA TCAAGGAACA GATTTACCAG CACAGCCTGC TGCAATCGGC GTTGCATAAC
TTTACCGAGG GTGAAACATT CGCCACCAGC ATCATGCAGG GCTCTGCGGT GCTGGATGCA
GCAGGGAATG CGTGCGCGCT CTCGGCCAAG GCATTCTTTA CCCTGTGCCG CTCGCTCGAC
CTGGGGGGGC GTTACCAGGC GTACCTGCGC GCGCAGCTGG CACCCGGCGG TGAAGCGGGA
AAACAACTGG GCACGCTGAT CGAGGCAGGC TATCGCGCGA GCCTTGAGGC GACGCTGCGG
CTGGCACTGG TCAATGGTGA AATACCAAGG CATGCCTATG AACATTGTGC CCCGCTGATT
GATCTGATCT CTGCTACACC TCCATCGATC CCTGGGCTGC GGCCAATGCA ATTGCGTGTG
TTCGGTCGGC TTGTGCGAGG CGCAGTGGCG TTCGAGATAA CCCATCAGCG TACGACCGGT
GACGTGTTCG AGGGAATATT GTGCTGGATC CCTGATGATC CTCAAGGCCC GCTGACCTGG
TATACCTCGT GGGCATCGCT GTTCCTGACG GTGGGTAAAC AGTTCCGTTT GCCCGGCTAC
GTCGAATTCT TCCAGCGCTT TATCGGTGAA CGCGACCGGG CTGCCTACAC CCGTGCCTTG
ACCGAAGCGC TGAACGATAC TGGCGAGGAT GTGCCGGTCC AGCTCGATGG ACGTTACGCA
CCAATCGAGC AGCCGTTGTT CGAATACCTG CGCCGGCAAC TGATCGACAC GCTGCTGGAC
AACGCCAAAG TGCACGCCAT ACCCACCGCC GAAGTGGACG CGCAGCAACG CGACAGGCGC
CTGCATTTCT ACCTCAGCTT TGGCCTGGAT GCGTTGGGCC TGGCGAGCTT TGCGCTACCT
GCACTTGCCT TGCCATTGCT GGGAATCACC GCGTTGCAGG TGGCTGACGA TGTTTACGAG
GGCTATGCCG ATTGGCGCCT GGGGGACCGG CAGGGTGCGC TGGAGCACAT GTACTCCGTA
GCGCAAACCG TGGGCATGAC GGCCGTCAAT GTCGGTGCAG GCGCGGCATC GCACCACCTG
ATGGAGGGCG CTCGCGTCGA AGACCTGGTG CCGGTGTACA CGGATGAGCA CACCGTGAAA
TTGTGCGACC CCAGGCTGCC AGGCTATGCC GTCCAAGACC GAGGAGCCGT CGGCGAGTTG
ATCAGCCTGC AAGGCACAGA ATATGTGCGT ACACCCTTGG CCAGCCATTT GACCTACTTG
GAGGCTCAAA CACAGCAGCG TCGCATCCGC CATCCCGTGC GTCCCAACGG TTATGCACCG
CTGCTTGAGG GCAGTGAGGG CGCTGGCTGG CAGCATGAAC TGGAGACGCC CCACGAATGG
CAGGGCAGCG CTGAGTTGTT TCAGGACCTC GATGCGGGCT GGGCGCACCT CGATGAACAG
GCCATACACG CGGTGATGCG GGCAACGGGG TTCAACCAAG ATCAACTGCG CCGCTTGCAC
GTAGACCAGG CACAGGCTCC GGCGCGCTTG CGCGATGCGG TGCAGAGGCA GCAGTTGCAC
GCTCGGCGGC CCGAGCTGAA AGGGGTGGAC TTCGAGCGAC AGCTACAGGC TCAGCAGCCC
CTGCCCGGCG AAGCGCAAAC CCTGCTTCGC CGGGACTTTC CCGGCCTCTC GGTAATGGGC
GCGCGTGAGA TCATCGAACA TGCGCCCGAG GACCAGGTGG AGCATATGCT TGCGCACCAG
CGTGTGCCGT TGGCCTTGGC CGAGCAGGCG CGGTGGTACG TGCGCGATAC CCGCCTGGAC
CGCGCCTGTG CGGGCCTGCT TCAAGCCGCA GCAATCAATC GTGACACCGA GCAACTGGCA
TTGGGCCTGA TCGCCGAGCG CGCGCCCTGG CGAGGGGTGC GCATCGAGCT GCGCGGTGAC
ACGCTGTCGG GTGAAATGAC TGCGTGGGCC GGAACGCAAG CGGCCAGCGA GGTACTCACC
GTGCTTCGAA CTGCCCAGGG TTATCAGGCG CTGGATGCGC GCGCAAACCC GTTGCCGTTG
GCCAGAGCTG ATGACAGCCT GTTCCAGGCC CTGTTGCAGC AGCTCGATCC CTGGCAGAAA
AGGATGTTGG GCGATGCCAG CGATTCCCCC GAAGCACTGG CTGAGGCCAT GTCGCAGTGG
GCCAGCGAAG AGCGCGAGCT CGCCGCTTCA ATTTTGCGCA TGGCGCCAGT CGGCCTTGGT
TTCAGGCCGC CGGTACGGCT GGGCGACGGG CGCCTGGGTT ACCCCTTGAG TGGCCGTGGT
GAAAGCAGCA ATCGCGCGTT GCGTCGGGGT ATCCAACGGC TGTTCCCCGA TTCCGACGAA
AACGCGATGG AGCAGTTTAC GCAGAACGCC CGCACGCTTG GGCTGACACC TTGGAATCAC
TACCTGCGCC TGTGTGAAGA GCTGCGCACG CTTGATCAGG CTTTGGGGTT GTGGCGTCGG
CAATCGTCGG GGCCGATTCA GTTGATCCGG CGAGCACGCA TGGCTCGGCG GATTCGTCAT
GCCTGGCAAA GACGCGCTCG CGACGGTGAC GGCCATCCTG CGTTGATACT GGAGGGATCT
GCCTTGGGCA GCCTGCCCGA ACTGCCTGAA CGCGTTCACT TCGACCATGT GACTTCACTG
GTACTGCGCA ATCTTCATCT GACGGCGCTC AGCGAGGGCT GGCTCTCCCG TTTCCCCAAT
GTACGGCGCC TGGACTTGTC GTCCAACCGG CTGATCTCGA TACCTGATAC CAGCGCCCTA
GAGCAACTGG AGCAGCTCGA TCTGCGTAAC AATCGCATTG TCGACATCAG TGAAGCGCAG
GCCGGCTGGC TACGCGCCAA CCCCGCCTGC GCGCGCTTGC AGGGCAACCC ACTTTCACCG
GCTGCACTCG AGCGGGTTGC CGTCGAGCCT GTAGCAGCCA TCCAGCAGGG GGAGGAGGGC
AGCGCTCCGT GGCTCGAAGG GCTGACCGAG CGGGAAGCCG CGCCGCGACG CAGGTATTGG
CAGGCGCTTG CTCAAGAACA AGGCAGCGAA GAGTTCTTCG CTTTTCTCAG TGCGTTGCTG
CATTCCGAGC GCTTTGCCGT AGAACCCCAA GACTTTCGGC GTCGCGTGGG TGAGCTGCTC
TATTGCATGT ACAACCATGC TCATGTTCGA CGGGCAGTAT TCCAGCAGGC TGCCGTGCCA
CGGCGCAGCG TGGACCTCGA TGTGCTGCTC GTCAATTTGA AGCTAGCGTT GCGCACAGAA
GGCCTGCGTG GTTGGCGCCT TGAGCATGAG TTGCGCGGCC TTGGGCGTGA GTTGTTCAGG
CTTGATCAGG TTAACCGCTT TGCTGCACGG CACATCGAAG GTTTGCGCCG GCGCTCTGTG
CCATTCAACC CTGGTGAGAT CTACCAGGCC TTTCGGGTTC AGCTTGCAGA GCCATTGGGT
ATTTACGGCC AACCGACTTA CCTCAGTTTC AGGCATGTCG AAAGTGTGAC CCCAAACGAC
CTGATAGAAG CCGAGGCAGC CGTATACGAG GCCGAAACAG CCGATGCACT CAGCCTGTTC
CTGGCGCAAC AGGCGTTCTG GCAGGACCAC GTCAAACTCG CTTATGCCGA TCAGTTTGCA
GCCATACGTC AAACCTACGA CGAACGGCGA ACTGCACTTT TCAGGGAGGG CGCACAAGAC
CCGGCCCCGA CACGTGCGGC GGAGCAAATT GCAGAGCAAC GCAGGGAGGA GGAGGACGCC
CTGACCTTGG CGCTGGCCCG CGGCAACTAT CGGATGTGGT TTCAGCTCGG ACTTGTCCAT
GGCCCTGGCT CGCGAGCATT TGCGCATCTG TCCAGTCGCC TTGAAGCCAG CCTGGCAATC
TGGCGCGGGC TGCCTGGCGA CCCTGAGTAT GCAGCGCGAT CCAATATGGC GGAGCTCCTG
CGGGGTTTCT GGCAGTCGCG TTACCACGAT GAAGAGCCAC CCCTGCGCTC GAGCAAGGAA
AGCTGGACTG TCAGTTCGTT ACCTGCGCTG CCCATGGGCA TCGTGTTCGA TCAGGTGCGT
AAATTGTCGT TGTGCAACCA GCAGGTTTCG GTCATCGAGC CGGATTTCCT GAGTCGGTTT
CCTAATTTGG TAACAATGGA CCTATCGGGC AATCGCCTGC GAGCGCTTGA TGGACTTGAG
CATTTGCCGC ACCTGCGCAG TGTGAACCTT GGGGGTAACA TGCTCGATAC AGTGGTGGGC
CTGGAGTACT TGACCGAACT GGTCGAGCTG GACCTCAGTG GCAATCAGCT CGATGACCTC
CCCGCCGGGC TAGAGCAGTT GGCCCGCCTG ACGCATCTCG ATCTCTCCTT CAATCAGATC
GCGGTCCTGG ATGATCGGGT AGGGCAACTG GTCAGCCTTG AAAACCTGCA ATTGAGCGGC
AACCTCCTGA GTGCTGTACC GAGCAGTGTC GGCAACCTTG CGCAGTTGAG CACTCTGAAC
GTCGGCTCGA ATCGCTTGCT CACCATCCCG GAAAATCTGA ATTACTTGGG TAGACTGACC
CAGTTGCACC TGCAGAACAA TTTCATCACC CTCGACGCGC AATCCCAACT GCGGCTGGAG
TGGTTTCCCA GGCTTGAAAT TCTCAACCTT GACGCGAACC CGTTGGGGGT GGCGCCGCAG
TTACGCTACA ACGTTCATCT TCACTACGTA TCGTTGTGTG CAACAGGCCT GCGCCGTCTT
CCTTTGACGT TGTTGCAGCG TTACCCGGAG TTGGTCTTGG ACTTGCGTGG CAATCGCATC
GGGGCGTTGA GCGAGGAGGC GTTGATCTGG GTCGAAGCGC ACCCGCACAG GGTCAACCTC
GAGCAGAATC AGCTGAGTGA GACGGTCATG GAGCGCGTGC GTGAAGCACT GGCTCGGCTG
CGGGCCGAAT GGGAGCGAGC TGCTGCGCCG CAGCCGGGAA CAGGAAGCAG AAGGTCTCAG
AACCGCAGGG GCTGA
|
|---|
| Protein sequence | MPSQPFTDDS TNALIASRLP AWLTELPSDT LHSLHESQQR QQQLQHQLHE WLARITPLDA
FAEPLLQQAL QAEHQLTIDV RRATLRRRTL QRYPSHVAQV PDGIKEQIYQ HSLLQSALHN
FTEGETFATS IMQGSAVLDA AGNACALSAK AFFTLCRSLD LGGRYQAYLR AQLAPGGEAG
KQLGTLIEAG YRASLEATLR LALVNGEIPR HAYEHCAPLI DLISATPPSI PGLRPMQLRV
FGRLVRGAVA FEITHQRTTG DVFEGILCWI PDDPQGPLTW YTSWASLFLT VGKQFRLPGY
VEFFQRFIGE RDRAAYTRAL TEALNDTGED VPVQLDGRYA PIEQPLFEYL RRQLIDTLLD
NAKVHAIPTA EVDAQQRDRR LHFYLSFGLD ALGLASFALP ALALPLLGIT ALQVADDVYE
GYADWRLGDR QGALEHMYSV AQTVGMTAVN VGAGAASHHL MEGARVEDLV PVYTDEHTVK
LCDPRLPGYA VQDRGAVGEL ISLQGTEYVR TPLASHLTYL EAQTQQRRIR HPVRPNGYAP
LLEGSEGAGW QHELETPHEW QGSAELFQDL DAGWAHLDEQ AIHAVMRATG FNQDQLRRLH
VDQAQAPARL RDAVQRQQLH ARRPELKGVD FERQLQAQQP LPGEAQTLLR RDFPGLSVMG
AREIIEHAPE DQVEHMLAHQ RVPLALAEQA RWYVRDTRLD RACAGLLQAA AINRDTEQLA
LGLIAERAPW RGVRIELRGD TLSGEMTAWA GTQAASEVLT VLRTAQGYQA LDARANPLPL
ARADDSLFQA LLQQLDPWQK RMLGDASDSP EALAEAMSQW ASEERELAAS ILRMAPVGLG
FRPPVRLGDG RLGYPLSGRG ESSNRALRRG IQRLFPDSDE NAMEQFTQNA RTLGLTPWNH
YLRLCEELRT LDQALGLWRR QSSGPIQLIR RARMARRIRH AWQRRARDGD GHPALILEGS
ALGSLPELPE RVHFDHVTSL VLRNLHLTAL SEGWLSRFPN VRRLDLSSNR LISIPDTSAL
EQLEQLDLRN NRIVDISEAQ AGWLRANPAC ARLQGNPLSP AALERVAVEP VAAIQQGEEG
SAPWLEGLTE REAAPRRRYW QALAQEQGSE EFFAFLSALL HSERFAVEPQ DFRRRVGELL
YCMYNHAHVR RAVFQQAAVP RRSVDLDVLL VNLKLALRTE GLRGWRLEHE LRGLGRELFR
LDQVNRFAAR HIEGLRRRSV PFNPGEIYQA FRVQLAEPLG IYGQPTYLSF RHVESVTPND
LIEAEAAVYE AETADALSLF LAQQAFWQDH VKLAYADQFA AIRQTYDERR TALFREGAQD
PAPTRAAEQI AEQRREEEDA LTLALARGNY RMWFQLGLVH GPGSRAFAHL SSRLEASLAI
WRGLPGDPEY AARSNMAELL RGFWQSRYHD EEPPLRSSKE SWTVSSLPAL PMGIVFDQVR
KLSLCNQQVS VIEPDFLSRF PNLVTMDLSG NRLRALDGLE HLPHLRSVNL GGNMLDTVVG
LEYLTELVEL DLSGNQLDDL PAGLEQLARL THLDLSFNQI AVLDDRVGQL VSLENLQLSG
NLLSAVPSSV GNLAQLSTLN VGSNRLLTIP ENLNYLGRLT QLHLQNNFIT LDAQSQLRLE
WFPRLEILNL DANPLGVAPQ LRYNVHLHYV SLCATGLRRL PLTLLQRYPE LVLDLRGNRI
GALSEEALIW VEAHPHRVNL EQNQLSETVM ERVREALARL RAEWERAAAP QPGTGSRRSQ
NRRG
|
|---|
| |