| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1497 |
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| Symbol | |
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| ID | 6110431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1649471 |
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| End bp | 1653322 |
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| Gene Length | 3852 bp |
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| Protein Length | 1283 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641621277 |
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| Product | YD repeat-/RHS repeat-containing protein |
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| Protein accession | YP_001748371 |
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| Protein GI | 170720683 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.81189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTCGA ATAATCGTTC AGTCCATTCC AATGCTTTCA ATTTCATGAG CCACCTGACC
GGCGGCGTTG ATTCACGTAC AGGCTTGTAT ACGTTTTCTG CCAACCTGCG CAGCATTACC
GGCAACGATC AGTTTGGGCC CGGGTTCGAC GTGTTGCTTC ACTATAGCCC GCTCAGTGTT
TCTGACAGTG GCTACGGCCA AGGCTGGAAC TTGCGTACCA CCGAGTTCGA CCCCGCCCGC
GAGCGCCGGA TCATTTCCCT GGCCAGCGGT GAAACCTTCA AAGTCGATGG CAGTGCCGGT
ACAAAAGAGC TGACGATGTC GGAGAAGAAA ATCGACACGT TTCATCTCTA TGAAGATGTG
ACCGACAGCC AGTGGCGCGT GGTGCATCGA AACCTGACGG TGGAGATTCT TGAGAAGAAG
GGTACCGGCG ACAAGACCAG GGCCGTGCCA ACCCGCATCT TCAGCCCGCA GGGGCATTGG
CTGAACCTGG AGTACGGCAT TTATGCCAGC TTCCCGATGC TGACCAAGAT CACCGACATG
CGTGGCGACA CACTGCTGGA GGTGGTTCGC GATGGCAACC GGGTCAAGCT GACGGTGCCA
ACAGATACCG ACAGCGCCGT TTACACCATG GTGCTGGGCG CCAACAACCG TGTAGACCGT
ATCGAGCTGC CCACCGATAA CCTGGCGAGC TGGCGCTTTA CCTATAGCCG CCAACGAAAT
GTCGACTGCA TCAGTGCGGT CCGCACCCCT ACAGGCGGTC ACGAAGCGAT TACCTATGGC
GATGGCGGCC ACCTGTTCCC GATCGGCTCA GGCCTTGACC CGATGCCGCG TGTGACCCGC
CATGTGCAGC ACCCAGGCCA TGGGCAACCC TCGATCGACA CGCGTTACAC CTATTCCGCT
GATGGGCATA ACTTCCTGGG TGGCAACATA AGGCTGAACT GGATCAACGA CGGATTGGAC
AATCTGTTCC GCCAGGCCAT CGACTATGAC TATGGCACCA CCGAGACCCT TTGGGTCGAA
GAGAAACCCG TGCGCAGCAT CGTCCGGGCG TTCAACAAGT TTCACTTGCT CACGAGTCAA
ACTACGTATG TGGGTGAGGA GTTGAATGAT GGAAAGAACG AAGTCATCGG CAACCAGATC
CAGGAAGTAA AGACGCAATA CAACCTCAAG CCCGGTTTAT TCAAGGAACA GCCCAATTAT
TGCCAGTTGG TCCATGGTGT CGATACGCTT TGGTGGTTGA AAAACAGCCC GACCGTCAAC
TTCAAACAAT CCGAAACCAG CACCTATGAT GACCACGGCA ACCTCAAGAC CCACAAGGCT
GTCACTGGCA TTGAAGAGGC TTACGAGTGG TATGGCGCAC AAGCGCCGGG GTTCCCGGGC
CATGAGGAAG GCTTCGTTAC CTACCTGAAG GAAAAAACGC AGAAACCGGC TACCGGCCAC
CCCGGTAACG CGCCGGAGCG AACCACGCAT TACACCTACC AGCAGTTGCC AACACTGACC
AGCGCCCGGT CGCAGACCCA GCAGCAACAC TGGCTGGAGG TGGAGGTTGA AACCTATACC
AGCGGCGCCA GCACAAAAAC TACACACTAT GCGTTTGCGC AGGCAGTGGA TGAAACAGCC
GTTGCGGCTC AGCCGCTACA GCACGGCCGG CTAAAGAGCC AGCAAACGCG CTTCCCGAAC
CCGAAGAAGG GGGAGCCGAA CCAGCCGGAT ACGCTCGACA CCCTGATCGA GCACACCTAC
ACCTACGAGA CGCTCACCTG GGACACAGCC AAGGCGCCGG GGCCTTTGGT CAAGGGTTCC
ATGCAAGTGC TACAGGACAA GCAGTTGGTG ACCGGCTACG ACGCCACCAG CAAGGAAATA
AGGGTGCAGC ATTCGCTGGC AACGGGTGAA ACAGTGCTCA ACCGTGATGA CACCAATACG
GAAATCATGA CCGTATGGGA TGCACTGCTG CGCGTCGAGC GGGAAATCGT CAGCCCAGGC
AAGGATGAAG AGGCGCTGCG GCGCTATGAG TACCAGCTGA GCGACGCGGA CGACGTTCAG
GCTACCCAGA CGCAGTACGA TGTGAAGGGT GTGATGACCG TGGCCTATTT CGACGGCGCT
TATCGTACCG TCAGGGAAGA GCGGGAAGAC CCGGATCATG GTCTGAAAAA GGGCGATACC
AAAGCCATCT ACACGGCCAG TTTCGACGCG TGGGGCAGGC CGCTGGAAGA GACGGAAATC
GACTGGCTCA AAGACCGTGA CCTTCACCTG AGCAGCCTAT ACAGGTACGA CAACTGGGGT
GAACAATTGT GTGTCATCGG CCCTGATGGC GTAGCTGAGT TCGCGCAAAC GAACCCTATC
GGTGATGGCA AAACCGGCCC GATCAAGCGT GAGTGGCGGC AGAAGCTGCT TGACGACGCA
GGCAATGAAC TGGAAAACGG CGCCAAGACC GGGGTCACCG AGACCCAGTT CAACCATTTT
GACTTGCCGG TTCAGGTCCG TCGCTGGGTG AAGAAGGACC CGGGTGATGA AAAGGAAACG
GAACTCAAGA GCGAAACGCT GACCGAGTAC GATGGGTACG GCCGCAAACA CAAGGAAGTG
TCGGGGATTG GTAGCGAAGC TGCAAAGCAG ATAGAAAAAT TTACCTACGA TGGGTTTGAT
CGCCTGCTGG CCCATGAACT GCGTGAAGGT GAGGTGGTTT ACAGAACCTT TGCTGCACAC
AGCGATCAGG ATTTGCCAAT CACCATTCGG GTGAATCAAC TGGAACTGCT GGGTGAGCAG
CACTTCAACG GCCTGGACCT GATGGACTGG TCGATCACCG GTGGTCGCAG GCAGGATTAT
CAATACAAAC CGGGTGAGCT CAAGCCGAGC AAGGTCATCA CGCCAGTGGG CGAAATTGAT
TATGAGTATC GCCCCTACCT GACCGAAGAA CCTGTGCTGC GAACACTGGG CGGCAAACAG
GCCAATTACG TATTCGACAA GCAGAATGCA CGCCTGGAAA GTTGTGACGA GGTGGGTGGG
CAAGCATTTT CCCGCACTTA CTACAGTACG GGTGAGGTAC ACGTTGAAAC CCGTGGCGGA
TACGACATGG AGTACGAATA CAGTTACCGT GGGCGTATGG AGTCGTATCG GGATGTGCTT
AAGCAGACTC AGGTCAATGA ATACGATAAC GTTGGCCGCC TTGATGTCAC CACGCTGGGG
ACGTTGTCGT GCAAATTCAA ATACGACGAT CTGGGCCGCA CCGAGTCGTA TGAAACAACG
GAAGCAGCTA GCGGCAGCAC GCTTGCCAAC TCACTGAAAA CCACGCTGCT GTATGACGAC
CTGGAGCGTG AATGTTCACG AACATTTACA TTCAGTAACG CACCCGAACA AGTGCTGGCG
CAACACTATG ATGAGTTTGA CCGCATCAAT GAACGCACAC TTTCGGAAGG TGAGGAGGTG
TTGCGTAAAG AGACGTACAA GTACGATACG CGCGGCAGGC TGTTCAGCTA TACCTGCGAA
GGCGAGCTGT GCCCGGTCGA CCCTTATGGT AAGAAGATAG CCAGCCAGAC GTTCCGCTTC
GATGCGATCG ATAACATCCG CCAGGTATTG ACCCGGTTCG AGGGTGGGCA GAATTCAGCT
CATTATTATT TTGAGAACAC GGCGGACCCT GCTCAACTTT CACGCATTAC CAATGACTTT
GGCGAGCCAT ATCCAAGCGA AATCAAGCTT GATTACGATG GTAATGGCAA TCTGATATTC
GATGAGGCAC GTCGTGAACT GGAATATGAC GCGCTCAACC GCCTGATAAA GGTAACGGAC
CCTGAAAAGG GTGAATGCCT GTACGGCTAT GATCCGCAGA ATATTCTGAG TTCGACTGAC
AGCGAGGCCT GA
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| Protein sequence | MMSNNRSVHS NAFNFMSHLT GGVDSRTGLY TFSANLRSIT GNDQFGPGFD VLLHYSPLSV
SDSGYGQGWN LRTTEFDPAR ERRIISLASG ETFKVDGSAG TKELTMSEKK IDTFHLYEDV
TDSQWRVVHR NLTVEILEKK GTGDKTRAVP TRIFSPQGHW LNLEYGIYAS FPMLTKITDM
RGDTLLEVVR DGNRVKLTVP TDTDSAVYTM VLGANNRVDR IELPTDNLAS WRFTYSRQRN
VDCISAVRTP TGGHEAITYG DGGHLFPIGS GLDPMPRVTR HVQHPGHGQP SIDTRYTYSA
DGHNFLGGNI RLNWINDGLD NLFRQAIDYD YGTTETLWVE EKPVRSIVRA FNKFHLLTSQ
TTYVGEELND GKNEVIGNQI QEVKTQYNLK PGLFKEQPNY CQLVHGVDTL WWLKNSPTVN
FKQSETSTYD DHGNLKTHKA VTGIEEAYEW YGAQAPGFPG HEEGFVTYLK EKTQKPATGH
PGNAPERTTH YTYQQLPTLT SARSQTQQQH WLEVEVETYT SGASTKTTHY AFAQAVDETA
VAAQPLQHGR LKSQQTRFPN PKKGEPNQPD TLDTLIEHTY TYETLTWDTA KAPGPLVKGS
MQVLQDKQLV TGYDATSKEI RVQHSLATGE TVLNRDDTNT EIMTVWDALL RVEREIVSPG
KDEEALRRYE YQLSDADDVQ ATQTQYDVKG VMTVAYFDGA YRTVREERED PDHGLKKGDT
KAIYTASFDA WGRPLEETEI DWLKDRDLHL SSLYRYDNWG EQLCVIGPDG VAEFAQTNPI
GDGKTGPIKR EWRQKLLDDA GNELENGAKT GVTETQFNHF DLPVQVRRWV KKDPGDEKET
ELKSETLTEY DGYGRKHKEV SGIGSEAAKQ IEKFTYDGFD RLLAHELREG EVVYRTFAAH
SDQDLPITIR VNQLELLGEQ HFNGLDLMDW SITGGRRQDY QYKPGELKPS KVITPVGEID
YEYRPYLTEE PVLRTLGGKQ ANYVFDKQNA RLESCDEVGG QAFSRTYYST GEVHVETRGG
YDMEYEYSYR GRMESYRDVL KQTQVNEYDN VGRLDVTTLG TLSCKFKYDD LGRTESYETT
EAASGSTLAN SLKTTLLYDD LERECSRTFT FSNAPEQVLA QHYDEFDRIN ERTLSEGEEV
LRKETYKYDT RGRLFSYTCE GELCPVDPYG KKIASQTFRF DAIDNIRQVL TRFEGGQNSA
HYYFENTADP AQLSRITNDF GEPYPSEIKL DYDGNGNLIF DEARRELEYD ALNRLIKVTD
PEKGECLYGY DPQNILSSTD SEA
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