| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0070 |
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| Symbol | |
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| ID | 6109240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 76031 |
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| End bp | 77335 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641619826 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001746945 |
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| Protein GI | 170719257 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.364137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000000158676 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAT CCCATCCCCT CATCCTAGCT CTGGTTTCCT ACCTCGAACA CGATGCGTTG
CCCACCATCG TGCTGGACAC CGACTACAAC ATCCTCGCAG CCAATGCCGC CTATCGTCGG
CAGTTTGGCC GTGATGACCG TGCGCCGCTG GGTGAGAAGT GCCACCGGGT TTCCCATCAC
TACGCCGTGC CTTGCGACCA GGCCGGGGAG CACTGCCCCA TGCGCAAGGC CTGGGGCAGC
AAACTGCCGG AACGGGTACT GCACATTCAT CACACCCCGC GCGGGCCTGA GCATGTGGAT
GTGGAACTAC GGCCGATCCT CGATGAGCAG GGCAGGGTGG TCGCCTTCGT AGAACGCCTG
ACAACGGTCA CACTAGCCTC GGCCCAACCT CAGCAACAGG GCCTGGTCGG CCGGGCGCCA
GCATTCAAAA CGGCATTGGC CAGCCTGCAA CGTGCGGCAC CCGCACAGAT CCCGGTATTG
CTCCAGGGTG AATCCGGTAC AGGCAAGGAG CTTTTCGCCC GGGCGATCCA TATGGGCAGC
CCGCGGGCGA ATGGCCCTTT GGTGGTGGTC GACTGCACCG GCTTGACCGA GTCACTGTTC
GAGAGTGAAT TGTTCGGCTA TGAGAAAGGA GCCTTTACCG GCGCCAACCA GCGCAAGATC
GGCCTGGCAG AAGCGGCCCA CGGCGGCACG CTCTTCCTCG ACGAGATTGG TGAGGTGCCA
CTGGCGATGC AGGTCAAATT GCTGCGCCTG ATCGAATCCG GCAGCTTCCG CCCGGTTGGC
AGCCTGCGTA CCGTGCATGC GGACTTCCGC CTGGTGTCTG CAACACACAA ACCGCTCAAG
CAGATGGTTG CAGAGGGCAC GTTCCGGGAA GACCTGTATT ACCGCATCAG TGGCTTTCCT
ATCCGCCTGC CCGCCTTACG CGAACGCGTA GAGGATCTGC CGCTGCTGGC GCAGAGCCTT
CTGCAGCGCA TGGCAGGCAA ACCTGCCGCG AGCCTTACTG ACGCTGCGCT GCAGCGATTG
GCCCTGCATA CGTTCCCGGG CAATATCCGC GAGCTGCGTA ATATCCTCGA AAGGGCGCGG
CTGTTTGCCG ATGATGGGCT GATACGGCCT GAGCATCTGC CGGAAGATGT AGGCCCGCAA
ATCGCAACCG GTGCGAACAA GGCGCGCGCT CGCAGCGACC TGAGTGATCT GGCACAAGCG
CTGGAACAGT TTCAGGGCCC GCGTAGCGAA CTGGCGCGCC ACTTAGGCAT GAGTGAACGT
ACGCTATATC GGCGCTTGAA AGCGCTAGGG CTGAATCCGG CTTAG
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| Protein sequence | MPESHPLILA LVSYLEHDAL PTIVLDTDYN ILAANAAYRR QFGRDDRAPL GEKCHRVSHH
YAVPCDQAGE HCPMRKAWGS KLPERVLHIH HTPRGPEHVD VELRPILDEQ GRVVAFVERL
TTVTLASAQP QQQGLVGRAP AFKTALASLQ RAAPAQIPVL LQGESGTGKE LFARAIHMGS
PRANGPLVVV DCTGLTESLF ESELFGYEKG AFTGANQRKI GLAEAAHGGT LFLDEIGEVP
LAMQVKLLRL IESGSFRPVG SLRTVHADFR LVSATHKPLK QMVAEGTFRE DLYYRISGFP
IRLPALRERV EDLPLLAQSL LQRMAGKPAA SLTDAALQRL ALHTFPGNIR ELRNILERAR
LFADDGLIRP EHLPEDVGPQ IATGANKARA RSDLSDLAQA LEQFQGPRSE LARHLGMSER
TLYRRLKALG LNPA
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