| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4730 |
|---|
| Symbol | |
|---|
| ID | 6144525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 4829345 |
|---|
| End bp | 4829938 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641619546 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001746654 |
|---|
| Protein GI | 170683046 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.88373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACTA AAAAACAATC TCGCGTTCCA GGTCGTCCCA GACGTTTCGC TCCTGAGCAG
GCAGTCTCTG CGGCAAAAGT GCTTTTTCAC CAAAAAGGTT TCGATGCTGT CAGTGTTGCT
GAAGTTACTG ATTATCTTGG TATTAACCCC CCGAGCCTCT ACGCGGCTTT TGGCAGTAAG
GCTGGGTTAT TTAGCCGTGT ACTCAATGAA TATGTCGGTA CGGAAGCTAT TCCGCTTGCC
GATATTCTTC GTGATGATCG TCCGGTAGGC GAGTGCCTGG TTGAGGTATT AAAAGAAGCG
GCGCGCAGAT ATAGCCAAAA CGGCGGCTGC GCTGGCTGTA TGGTTCTTGA AGGTATTCAT
AGTCATGATC CACAAGCGCG TGATATTGCC GTTCAATATT ATCACGCCGC AGAAACGACC
ATTTATGACT ATATCGCCAG GCGGCATCCA CAAAGCGCAC AATGTGTGAC TGATTTTATG
AGTACCGTGA TGTCAGGGCT TTCTGCGAAG GCACGGGAGG GGCACTCCAT CGAACAACTC
TGTGCAACAG CTGCCATGGC GGGGGAAGCG ATAACAACTC TTCTCAAGGA GTGA
|
|---|
| Protein sequence | MVTKKQSRVP GRPRRFAPEQ AVSAAKVLFH QKGFDAVSVA EVTDYLGINP PSLYAAFGSK
AGLFSRVLNE YVGTEAIPLA DILRDDRPVG ECLVEVLKEA ARRYSQNGGC AGCMVLEGIH
SHDPQARDIA VQYYHAAETT IYDYIARRHP QSAQCVTDFM STVMSGLSAK AREGHSIEQL
CATAAMAGEA ITTLLKE
|
|---|
| |