| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4299 |
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| Symbol | rhaR |
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| ID | 6143463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4400984 |
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| End bp | 4401922 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641619119 |
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| Product | transcriptional activator RhaR |
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| Protein accession | YP_001746243 |
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| Protein GI | 170680171 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.0471375 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCT GCAATAACGC GAATCTTCTC AACGTATTTG TACGCCATAT TGCGAATAAT
CAACTTCGTT CTCTGACCGA GGTAGCCACG GTGGCGCATC AGTTAAAACT TCTCAAAGAT
GATTTTTTTG CCAGCGACCA GCAGGCAGTC GCTGTGGCTG ACCGTTATCC GCAAGATGTC
TTTGCTGAAC ATACACATGA TTTTTGTGAG CTGGTAATTG TCTGGCGCGG TAATGGTCTG
CATGTACTCA ACGATCGCCC TTATCGCATT ACCCGTGGCG ATCTCTTTTA CATTCATGCT
GACGATAAAC ACTCCTACGC TTCCGTTAAC GATCTGGTTT TGCAGAATAT TATTTATTGC
CCGGAGCGGC TGAAGCTGAA TCTTGACTGG CAGGGGGCGA TTCCGGGATT TAGCGCCAGC
GCAGGGCAAC CACACTGGCG CTTAGGTAGC ATGGGGATGG CACAGGCGCG GCAGATTATC
GGTCAGCTTG AGCATGAAAG TAGTCAGCAT GTGCCGTTTG CTAACGAAAT GGCAGAGTTG
CTGTTCGGGC AGTTGGTGAT GTCGCTGAAT CGCCATCGTT ACACCAGCGA TTCGTTGCCG
CCAACATCCA GCGAAACGTT GCTGGATAAG CTGATTACCC GGCTGGCGGC CAGCCTGAAA
AGTCCCTTTG CGCTGGATGA GTTTTGTGAT GAGGCATCGT GCAGTGAGCG CGTTTTGCGT
CAGCAATTTC GCCAGCAGAC TGGAATGACC ATCAATCAAT ATCTGCGGCA GGTCAGAGTG
TGTCATGCGC AATATCTTCT CCAGCATAGC CGCCTGTTAA TCAGTGATAT TTCAACCGAA
TGTGGCTTTG AAGATAGTAA CTATTTTTCG GTGGTGTTTA CCCGGGAAAC CGGGATGACG
CCCAGCCAGT GGCGTCATCT CAATTCGCAG AAAGATTAA
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| Protein sequence | MAFCNNANLL NVFVRHIANN QLRSLTEVAT VAHQLKLLKD DFFASDQQAV AVADRYPQDV
FAEHTHDFCE LVIVWRGNGL HVLNDRPYRI TRGDLFYIHA DDKHSYASVN DLVLQNIIYC
PERLKLNLDW QGAIPGFSAS AGQPHWRLGS MGMAQARQII GQLEHESSQH VPFANEMAEL
LFGQLVMSLN RHRYTSDSLP PTSSETLLDK LITRLAASLK SPFALDEFCD EASCSERVLR
QQFRQQTGMT INQYLRQVRV CHAQYLLQHS RLLISDISTE CGFEDSNYFS VVFTRETGMT
PSQWRHLNSQ KD
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