| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3981 |
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| Symbol | ligB |
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| ID | 6143314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4057512 |
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| End bp | 4059194 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618808 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001745947 |
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| Protein GI | 170681126 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAT GGATGGCGAT ATTAATAAGT ATCTTGTGCT GGCAATCATC GGCGTGGGCA
GTCTGTCCGG CCTGGTCGCC AGCCAGAGCA CAGGAAGAAA TTTCCCGCCT GCAACAGCAA
ATAAAACAGT GGGACGATGA CTACTGGAAG GAAGGGAAAA GTGAGGTGGA AGACGGTGTT
TACGATCAGT TAAGCGCCCG TCTCACGCAG TGGCAACGCT GTTTTGGGAA CGAGACTCGC
GACGCTATGA TGCCGCCTTT AAACGGTGCG GTTATGCATC CGGTTGCCCA TACGGGTGTA
CGCAAAATGG CGGATAAAAA CGCATTAAGT CTGTGGATGC GCGAACGTAG CGATCTTTGG
GTGCAGCCAA AAGTTGATGG CGTTGCGGTA ACCCTGGTTT ATCGGGACGG GAAACTGAAC
AAAGCAATCA GTCGCGGTAA TGGCCTGAAA GGCGAGGACT GGACGCAGAA AGTTCGCTTA
ATTTCCGCTG TGCCGCAAAC CGTTAGCGGG CCTTTAGCCA ACAGCACGCT TCAGGGGGAA
ATATTTCTCA AGCGTAAGGG GCATATCCAA CAACAAATGG GGGGAATAAA TGCCCGCGCA
AAAGTTGCTG GCCTGATGAT GCGCCAGGGG AATAGCGATA CGCTAAACTC ACTGGCTGTT
TTTGTCTGGG CATGGCCGGA TGGACCGCAG TTAATGACCG ATCGTTTAAA GGAGCTGGCT
ACCGCAGGTT TTACTCTAAC GCAGACGTAT ACCCGTGCGG TTAAAAATGC TGATGAGGTT
GCGCACGTAC GCAATGAGTG GTGGAAAGCA AAATTACCCT TCGTCACCGA TGGCGTGGTT
GTGCGAGCGG CGAAAGAACC CGAATCCCGT CATTGGCTAC CGGGCCAGGC GGAGTGGCTG
GTGGCCTGGA AATATCAACC TGTAGCTCAG GTTGCCGAAG TGAAGGCGAT TCAGTTTGCG
GTGGGTAAGA GCGGTAAAAT ATCGGTGGTT GCGTCACTCG CACCTGTCAT GCTGGATGAT
AAAAAAGTCC AGCGGGTGAA TATTGGTTCC GTCAGGCGCT GGCAGGAGTG GGATATTGCG
CCTGGTGATC AGATCCTCGT CAGCCTTGCC GGTCAGGGTA TTCCTCGCAT TGATGATGTG
GTCTGGCGCG GTGCAGAACG TACAAAACCG ACACCACCAG AAAACCGCTT TAACTCGTTG
ACCTGCTACT TTGCTTCTGA TGTTTGTCAG GAACAGTTCA TTTCACGCTT AGTCTGGCTG
GGGTCAAAAC AGGTTCTTGG GCTGGATGGC ATTGGTGAGG CCGGCTGGCG CGCGCTGCAT
CAGACTCATC GCTTTGAGCA TATCTTTTCC TGGCTTTTAT TAACGCCAGA GCAATTACAG
AACACGCCGG GGATCGCGAA AAGTAAAAGT GCGCAGTTAT GGCATCAATT TAATCTGGCT
CGTCAGCAGC CTTTTACTCG CTGGGTGATG GCAATGGGAA TACCGCTAAC CCGGGCGGCG
CTTAATGCCA GTGATGAACG GTCCTGGTCG CAACTTTTAT TTAGCACAGA ACAGTTCTGG
CAGCAGTTGC CGGGGACTGG ATCGGGGCGC GCCAGACAGG TTATTGAATG GAAGGAAAAT
GCGCAAATCA AGAAGCTGGG CAGTTGGCTG GCTGCCCAGC AGATCACAGG TTTTGAACCT
TAG
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| Protein sequence | MKVWMAILIS ILCWQSSAWA VCPAWSPARA QEEISRLQQQ IKQWDDDYWK EGKSEVEDGV
YDQLSARLTQ WQRCFGNETR DAMMPPLNGA VMHPVAHTGV RKMADKNALS LWMRERSDLW
VQPKVDGVAV TLVYRDGKLN KAISRGNGLK GEDWTQKVRL ISAVPQTVSG PLANSTLQGE
IFLKRKGHIQ QQMGGINARA KVAGLMMRQG NSDTLNSLAV FVWAWPDGPQ LMTDRLKELA
TAGFTLTQTY TRAVKNADEV AHVRNEWWKA KLPFVTDGVV VRAAKEPESR HWLPGQAEWL
VAWKYQPVAQ VAEVKAIQFA VGKSGKISVV ASLAPVMLDD KKVQRVNIGS VRRWQEWDIA
PGDQILVSLA GQGIPRIDDV VWRGAERTKP TPPENRFNSL TCYFASDVCQ EQFISRLVWL
GSKQVLGLDG IGEAGWRALH QTHRFEHIFS WLLLTPEQLQ NTPGIAKSKS AQLWHQFNLA
RQQPFTRWVM AMGIPLTRAA LNASDERSWS QLLFSTEQFW QQLPGTGSGR ARQVIEWKEN
AQIKKLGSWL AAQQITGFEP
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