| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3926 |
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| Symbol | |
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| ID | 6143802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4000504 |
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| End bp | 4002861 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641618752 |
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| Product | putative fimbrial usher protein FanD |
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| Protein accession | YP_001745891 |
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| Protein GI | 170681449 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.540204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG AAATATTTAT TGCCGCTATT ATTTTTCATT TACTATCTAA AGGTGCTCTT
GCCGAAGAGT TCAACTACAG CTTTATTCGT GGAGGGAGTA AGGATATTCC TGATGTTTTA
AACAGCAATA AAGAAAACGT ACCGGGTAAA TATGTTGTTG ATGTTGTTTT CAATGGTTCT
AAAATCGCGT CATCTACTGA GATGAGCATC GCAAAAGAGG ATGCTGAGGG GATATGTCTT
TCTGATGAAT GGCTAACTGA AAACGGCATT ATAATTAATA AAGATTTTTA TAAAAATGTT
TATAATTCTG CACGCCAGTG CTATTTGCTG GGTAATGAGG CGAACAGTAA AGTCGCGTTT
GATCAATCGT TGCAAGAAGT ATCTATTGAT TTGCCACAGG CAGGCTTCCA GGACGCAGCA
AAAGATGGTG GTGTGTGGGA CTATGGTAGT AACGGTTTTA AAATAGCTTA TGACGTTAAT
ACTGCAAAAA ATAGCAACCA GGAAAGAACC ACCTACAGTA GTATTGATGG CCAGGTGAAT
CTGGGCGAAT GGGTGTTATT GGGTAGGGGG TATGCTTACC AGGGCGAAAA TTTCGATACT
AATAACCTGT TACTGACGCG GGCAATCAAA TCACTGAAAT CCGATTTGCA ACTGGGCAAG
ACACAGCTTT ATAACTCATT GAATAATGGT TTTACCTTTT ACGGTGCTCA GCTTAAATCG
AATCAGGATA TGTATCCGTG GAACTCTCGT GCCTATTCGC CGGTAATTAA TGGTATTGCG
CGAACCCATG CCAGGGTAAC CATTGAGCAG AGTGGTTATA CCTTAAAATC TATTGTCGTG
CCTCCGGGAC CATTTGTGAT CAACGATCTT AACGGCGTTT ACTCTGGCGA TTTGATCATG
AAAATCTATG AAGAGGATGG CTCCGTTCGT GAACAGCGTT TCCCTGTCGC AGTGTTGCCT
AATTTGTTAA GACCGGGAAC GTATAACTAC GCCCTCGCCA TGGGTAGCAA AGTTAACCAA
GATAATGGCG AACGGGATAA AGAAAGTCTG TTTGCCCAAA TGAGTTATGA CTATGGATTC
GAGCCTTTTA CACTCAATAG CTCTTTATTG CTGGATAAAA ATTATAACAA TATTGGTTTA
GGACTAATTC GCTCGTTTGG ATGGTTTGGA GCCATGTCTT TTAGTGGCAA CTTATCACAA
GCAAAATACC ATAATGGTAA GAATCTAAAA GGCTATAGCA CGTCATTAAA ATATGCAAAA
GCGCTTGGTG ATAATGCAAA TTTACAGCTT ATTGGTTACC GTTTTAATTC AGAGGATTAT
ATTGACTATG CTGATTTTAC TTATAATTCA TATAGTTTTA TAAGAAATAG GCCAAAGCAA
CGCTATGAGT CAATCGTTAC CTACCAGCTA CCAGAAAAAG GTATGTTTTT AAACTTTTCT
GCGTGGAAGG AAGATTACTG GGATAATTAT AACGAGGTCG GTGCTAACTT AAGTCTGACA
AAAAGTTTTG ATCAAATAAC AATGACACTG AACGGTGGTT ATTCCAGACT GCAAAATATG
GATGCTGACT ATAATGTTGG TTTGTCATTA AGTGTGCCGT TAAGTCTGTT TGATAAAACA
CATTATAGTT TTTCGAATGT TAACTATGAT CGACGTACGG GGACCAGTAT GAATACTGGG
ATCTCAGGAA TGATTAATCA AAGGCTGAGT TATAACGCAT CAGTTAACCA GACGCGTGAT
ACTATCGGTG GTACACTTTC TGCCTCCTAT TTATTCGACT GGATGCAGAC GTCAGCAACG
TATTCACAAA CTGGGAAAAA TTCATCTACT TCACTCCAGT TGGGTGGTAG TGTAATTGGT
GTGCCAGAAG GTGGCATAAT ATTTACTCCA GTTAAAAATG ATCAACTGGC TATCGTGCAA
ATGAAAGATG TCCCCGGTGT TATGTTTAAC GGTTCTTTAC CGGGAGATAA ATATGGTCGG
GCGGTAATCC CACTTACTGC TTATAACAAT AATACGATTT CTGTAAATGC AGAAAAATTA
CCGAAGAATA TTGAGCTTAC AGATAATGCG ATTAATGTGA CCCCAACGGG AAATGCTATC
ATTTATAAAA ATGTGAAGTT TAAGAAAATT AATACCTATG TGGTTAAACT TTATGGGAAA
AATGGTTATG TCGTTCCTAT GGGTAGCATC GCAAAAAATA CACAGGGTAA AGAAGTGGGT
TATGTAAATA ACGGTGGTAT TTTGCTGATG AACCTTGAAA CACACGATGA AGGTGTTATT
TCGCTTGACC AGTGTCAATT TAATACGCAG TCACTGAAGA AAAACTATGA CCAAACTCAG
GAGATTCACT GTGAGTAA
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| Protein sequence | MKKEIFIAAI IFHLLSKGAL AEEFNYSFIR GGSKDIPDVL NSNKENVPGK YVVDVVFNGS
KIASSTEMSI AKEDAEGICL SDEWLTENGI IINKDFYKNV YNSARQCYLL GNEANSKVAF
DQSLQEVSID LPQAGFQDAA KDGGVWDYGS NGFKIAYDVN TAKNSNQERT TYSSIDGQVN
LGEWVLLGRG YAYQGENFDT NNLLLTRAIK SLKSDLQLGK TQLYNSLNNG FTFYGAQLKS
NQDMYPWNSR AYSPVINGIA RTHARVTIEQ SGYTLKSIVV PPGPFVINDL NGVYSGDLIM
KIYEEDGSVR EQRFPVAVLP NLLRPGTYNY ALAMGSKVNQ DNGERDKESL FAQMSYDYGF
EPFTLNSSLL LDKNYNNIGL GLIRSFGWFG AMSFSGNLSQ AKYHNGKNLK GYSTSLKYAK
ALGDNANLQL IGYRFNSEDY IDYADFTYNS YSFIRNRPKQ RYESIVTYQL PEKGMFLNFS
AWKEDYWDNY NEVGANLSLT KSFDQITMTL NGGYSRLQNM DADYNVGLSL SVPLSLFDKT
HYSFSNVNYD RRTGTSMNTG ISGMINQRLS YNASVNQTRD TIGGTLSASY LFDWMQTSAT
YSQTGKNSST SLQLGGSVIG VPEGGIIFTP VKNDQLAIVQ MKDVPGVMFN GSLPGDKYGR
AVIPLTAYNN NTISVNAEKL PKNIELTDNA INVTPTGNAI IYKNVKFKKI NTYVVKLYGK
NGYVVPMGSI AKNTQGKEVG YVNNGGILLM NLETHDEGVI SLDQCQFNTQ SLKKNYDQTQ
EIHCE
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