| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3921 |
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| Symbol | |
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| ID | 6145561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3993788 |
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| End bp | 3997597 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641618747 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001745886 |
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| Protein GI | 170682879 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.728778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTG TATATACTCT AAAGTTAAAT AAAAAAAGAG AGTTGGTTGT AGTATCTGAA
CTTTCTGGTG GGGTTAAAAA ATCAGCTCGA AATAAGCTAT TAAAATCTGT TGTTGTTTTA
ATGACTACTT TAGCTACTCA ACTCTATTCA CCATTAATTC AGGCGTCAAT TGTGGGAATG
GATATCCCAT ATCAGACCTA TCGTGATTTC GCTGAAAATA AAGGAGCGTT CTCAGTCGGA
GCGCTGGATA TTCCTTTGTA TAAGAAAGAC GGGACGTTGT ACTCCACACT GAATAAGGCG
CCAATGATAG ATTTTAGCGC TGTTGATAGT GGACAGACAG TAGCTACGTT AATTTCGCCA
CAATATATTG TAAGCGTAAA GCATAATACT GGCTATAAGA ATGTTCGGTT TGGCTACAGA
GATGATAGTT CTTATATTCT TGTCGATCGT AATAATAGTT CTGTAGATTT CCATACTCCG
CGTTTAAATA AAATTGTAAC CGAAGTGGTT CCGGCTGATA TAACCGATGC CGGTACTGCC
AACGGAACTT ATCAAAATCA AGACCGTTTT CCGATCTTTT ACCGTGTTGG TACTGGTACG
CAATATGTGA AAGACCGTAA TGGGAAATTA ACTCAACTTG CTGGCGGTTA CGCATATAGA
ACGGGCGGGA CCGTTGGTAA ACCAACATCA TCAAACAAGA GAATAGTGTC CAACCCTGGT
AATACCTATT CTGCGGCTAA CGGCCCTATG CCTTCCTATG GAATCCCCGG TGATAGTGGC
TCTCCCCTTT TTGCCTGGGA TACGCAACGT AATAAATGGG TGTTGGTTGC AGTACTCAAT
TCCTATGCGG GTAATGCAGG AAAAACCAAC TGGTTTACCG TTATTCCAGT GAATGAAGTG
AGTGCCAATA TTGAGGCTGA TACTGACGCG CCAGTGACGC CAACGAGTAC AACCGAAAAT
ATTAACTGGA CTTACGATAT TTCCACGGGT ACCGGTAAGC TGACCCAGGG AACGGATGCC
TGGGAGATGC ATGGTCGTGA CACTGGAAGT AGTGCTGTTT CATTTAATCA TGGAAAGGAT
TTGTCCTTCG AAAACACCGG CACAGTGGTA TTAAAGGATA TTGTCAATCA GGGAGCGGGT
ACGCTCACAT TTAACGGTGA TTACATAGTA AAACCGGACG CTGATCAGAC TTGGGTAGGG
GGCGGTATTA TTGTCAATGG TGATCATACC GTGAACTGGC AAGTTAACGG TGTTAAGGGC
GATAGTATGC ATAAGCTAGG TACCGGGACG TTAAACATTT CCGGCACTGG CATCAATCCC
GGAACGCTCA GTGTGGGTGA TGGAACAGTT GTGCTCGCCC AAAAACCAGA TAGCAACGGT
CAGGTTCAGG CGTTCGAGTC CGCCAGTATT GTTAGTGGTA GGCCAACTCT GGTACTGAGC
GATAGTCAGC AAATGAACCC GGATAATATC AAATGGGGGT ATCGTGGCGG CAAACTCGAT
ATTAACGGTA ATGATTTAAC CTTTCATGCG TTAAATGCAG CTGATGAAGG AGCGATATTA
ACCAATAGCG GTTCGCTTGC GACAACTAGC CTGGATTTTA ATTCAACAGA CACCACGAAG
CCGGTGACGA CGATGTTCCA TGGTTTTTTC ACTGGCAATG TGAATGTTAA AAATAACGCA
ACATCCAATG TGAATAATAC ATTCGTGGTT GATGGCGGAA TTAATACGCC AGCGGGTAGT
ATGACGCAGC AGGGGGGGCG CCTCTTTTTT CAGGGACATC CGGTTATCCA TGCTGTGAGC
ACTCAGTCAG TCGCCAATAA ATTAAAGGCG CTGGGCGATG ATTCCGTGCT CACCCAACCT
GTCTCTTTCA CGCAAAGTGA CTGGCAAACA CGGCAATTTA ATCTGAAGTC GCTGGATCTC
AACAATGCGG CATTTTACCT TGCTCGTAAT GCAGGATTAA TCACAACAAT CAATGCCAAT
AATTCCACTG TTACTTTGGG TAGTGAAGAT CTTTATATAG ATACCAATGA TGGTAATGGC
GTAAAAACGA CACCTGTGGA AGGTCAATCA GTTGCGACTG CATCAGAAGA TCAAAGCCAC
TTTACGGGGA ACGTTAATCT GACAAATGGC TCAGCCCTGC GGGTCAATGA GAACTTCAGT
GGTGGAATTA TCAGTAGCAA TAGTAGTGTA ACTATCTCTT CGACTAACGC GAATCTGACC
GAGAGCAGCA TGTTTACCCA CTCTGTAATC AAACTCTCTG ATAATGCTCA ACTGACAAGC
ACTGCCGGTT TGCAATCGGA TGGTACTATC GAGTTCGGAA ATGGGGCAAA ACTCTCATTG
TTAGGGGAAT CATCGTCAAC CTTTACGCCT TTTTCAGCAA CGGCCTGGAA TCTCAAGGGG
ACCGGATCCT CGCTGAATAT TGGTTCTGGC ACCAACGTCA ATGGCGACAT TAATGCATGG
TCTGATACCA ACATTAACTT TGGGAATAGC GGAAAACAAA GTACGTCATC AGGCATTTTG
TATACAGGCG ATATCTACGC ACCAGAAGCT AATGTCAGCA TTGATAACAC TTCATGGACA
TTGAACAAAA CCTCATTGCT GGGCAATCTG ACACTCAAAA ACAGTCAGCT TATTATGTCT
ACAGATGGCA AGACCAGCAG CGGCATCAAG GTTGTTGATA CGTTTAGTGG AGAAAACAAT
ATTCTGTATG TGAAACCGAC CCGGTCGCTT AGTGAAATGT CGGTCAGCAA TATTCCGCTT
ATTACCGCCA AAAACGTAAC CAACAATACC CGGGTATTTA AAACGGTGAC CCAACAAACA
GGCTTTCACT CAATGACTCC AAAGATTGAG GTGGTTAATG TCGATGGGAC TACACAGTGG
CGTCTGAAAG GATTCGATGT TCAGAGTGAT AGTACAGCGC TTAAAGAAGG TCAGCGTTTG
ATGAACACTA ATATTAAAAA CTTTCTGACT GAGGTTAATA ACTTAAACCG TCGTATGGGT
GACCTGCGCG ATACAAAAGG TGAAACCGGC GCATGGGCTC GGTTGATGAA CTCTTCTGGC
TCAGGTTATG GCGGTTTTTC CGATCGCCAC GTACATCTGC AGGTTGGTGC TGACAGAAAG
CATCATTTTG AGGGGGGAGA TCTTTTTACA GGCGTCATGA TGACCGTTAC CGATAGTAAA
GCCAGCGCTG AAAGTTATCA GGGGAAAACC CGTTCCGTAG GTGGTGGACT GTACGCATCG
ACATTGTTTG ATTCAGGCGT GTATGTTGAC GTAATCGGTA AATATGTCCA TCACAGCAAC
GACTATTTAC TGCAAACGAT GGGATTAAAG GCAGACGATA CTGCTCACTC ATGGTATTTA
GGCGCAGAAA CGGGTTGGCG CTATCAGTGG AAGCCTGATG TCTTTATTGA ACCGCAGGCC
GAACTGGTTT ACGGGACGTT GTCAGGCAAT ACCTTTAACT GGCAATACAA CGGTATGGAT
GTCAGCATGG AGCGTAAAAA GGCAAAACCC TTGATTGGCC GTACTGGTGT GGAGTTTGGA
AAAACACTGG ATGGCCGCGA CTGGCAGGTT ACAGCGAAGG CTGGTTTAAG TTATCAATTT
GACCTGCGTA ATACTGGTGC TACCACGTAC CGTGATTTTG CTGGTGAGTC CACCGTGTAC
AACGGTAAAG ATGGTCGTAT GTTAGCCAAT ATTGGGATTG ATACACGCAT TAAAGACAAT
ACCCGTATCG GCCTGACCGT TGAGAAATCA GCATTTGGTA AGTACAACGT CGATAATGCG
ATCAATGCTA ATATCCGCTA TACATTCTAA
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| Protein sequence | MNFVYTLKLN KKRELVVVSE LSGGVKKSAR NKLLKSVVVL MTTLATQLYS PLIQASIVGM
DIPYQTYRDF AENKGAFSVG ALDIPLYKKD GTLYSTLNKA PMIDFSAVDS GQTVATLISP
QYIVSVKHNT GYKNVRFGYR DDSSYILVDR NNSSVDFHTP RLNKIVTEVV PADITDAGTA
NGTYQNQDRF PIFYRVGTGT QYVKDRNGKL TQLAGGYAYR TGGTVGKPTS SNKRIVSNPG
NTYSAANGPM PSYGIPGDSG SPLFAWDTQR NKWVLVAVLN SYAGNAGKTN WFTVIPVNEV
SANIEADTDA PVTPTSTTEN INWTYDISTG TGKLTQGTDA WEMHGRDTGS SAVSFNHGKD
LSFENTGTVV LKDIVNQGAG TLTFNGDYIV KPDADQTWVG GGIIVNGDHT VNWQVNGVKG
DSMHKLGTGT LNISGTGINP GTLSVGDGTV VLAQKPDSNG QVQAFESASI VSGRPTLVLS
DSQQMNPDNI KWGYRGGKLD INGNDLTFHA LNAADEGAIL TNSGSLATTS LDFNSTDTTK
PVTTMFHGFF TGNVNVKNNA TSNVNNTFVV DGGINTPAGS MTQQGGRLFF QGHPVIHAVS
TQSVANKLKA LGDDSVLTQP VSFTQSDWQT RQFNLKSLDL NNAAFYLARN AGLITTINAN
NSTVTLGSED LYIDTNDGNG VKTTPVEGQS VATASEDQSH FTGNVNLTNG SALRVNENFS
GGIISSNSSV TISSTNANLT ESSMFTHSVI KLSDNAQLTS TAGLQSDGTI EFGNGAKLSL
LGESSSTFTP FSATAWNLKG TGSSLNIGSG TNVNGDINAW SDTNINFGNS GKQSTSSGIL
YTGDIYAPEA NVSIDNTSWT LNKTSLLGNL TLKNSQLIMS TDGKTSSGIK VVDTFSGENN
ILYVKPTRSL SEMSVSNIPL ITAKNVTNNT RVFKTVTQQT GFHSMTPKIE VVNVDGTTQW
RLKGFDVQSD STALKEGQRL MNTNIKNFLT EVNNLNRRMG DLRDTKGETG AWARLMNSSG
SGYGGFSDRH VHLQVGADRK HHFEGGDLFT GVMMTVTDSK ASAESYQGKT RSVGGGLYAS
TLFDSGVYVD VIGKYVHHSN DYLLQTMGLK ADDTAHSWYL GAETGWRYQW KPDVFIEPQA
ELVYGTLSGN TFNWQYNGMD VSMERKKAKP LIGRTGVEFG KTLDGRDWQV TAKAGLSYQF
DLRNTGATTY RDFAGESTVY NGKDGRMLAN IGIDTRIKDN TRIGLTVEKS AFGKYNVDNA
INANIRYTF
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