Gene EcSMS35_3886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3886 
Symbol 
ID6144103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3953565 
End bp3953906 
Gene Length342 bp 
Protein Length113 aa 
Translation table11 
GC content43% 
IMG OID641618712 
Producthypothetical protein 
Protein accessionYP_001745851 
Protein GI170680413 
COG category[S] Function unknown 
COG ID[COG4682] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCT CAAAGACTGT GGCAAAACTA TTATTTGTTG TCGGGGCGCT GGTTTATCTG 
GTTGGGCTAT GGATCTCATG CCCATTGTTA AGTGGAAAAG GCTATTTTCT TGGCGTGTTA
ATGACAGCAA CTTTTGGCAA TTATGCATAT CTTCGCGCAG AAAAACTCGG GCAACTGGAT
GATTTTTTTA TCCGCGTCTG CCAGTTGCTG GCGTTAATCA CTATCGGTCT CTTGTTTATC
GGTGTTTTAA ACGCACCTAT CAATGCTTAT GAAATGGTGA TCTATCCCAT CGCCTTTTTT
GTCTGCTTGT TTGGTCAAAT GCGTTTGTTT CGCTCGGCAT GA
 
Protein sequence
MKTSKTVAKL LFVVGALVYL VGLWISCPLL SGKGYFLGVL MTATFGNYAY LRAEKLGQLD 
DFFIRVCQLL ALITIGLLFI GVLNAPINAY EMVIYPIAFF VCLFGQMRLF RSA