| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3703 |
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| Symbol | rtcR |
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| ID | 6144039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3765799 |
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| End bp | 3767397 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641618529 |
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| Product | sigma-54 dependent transcriptional regulator RtcR |
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| Protein accession | YP_001745669 |
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| Protein GI | 170680280 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.973563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.184346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAAAA CAGTGGCTTT TGGTTTTGTC GGAACGGTGT TGGATTATGC CGGGCGCGGC
AGTCAGCGCT GGTCAAAATG GCGTCCGTCA CTCTGTCTAT GCCAGCAAGA ATCGTTAGTC
ATCAATCGAC TGGAATTGTT GCACGACGCC CGCTCACGCT CGCTGTTTGA AACGCTTAAA
CGCGATATCG CCAATGTTTC GCCAGAAACA AAAGTGGTGG GCGTTGAGAT TGAACTGCAT
AACCCATGGG ATTTCGAGGA GGTTTACGCC TGCCTGCATG ATTTCGCCCG TGGTTACGCG
TTCGAACCTG ATAAAGAAGA CTATTTAATT CACATCACCA CCGGTACCCA CGTCGCGCAG
ATTTGCTGGT TTCTGCTGGC GGAAGCACGT TACCTGCCCG CCAGGTTAAT ACAATCTTCG
CCACCGCGTA AAAAAGAACA GCCGCGCGGT GCAGGTGAAG TGACGATTAT CGATCTCGAT
TTAAGCCGTT ATAACGCCAT CGCCAGCCGC TTTGCCGAGG AACGCCAGCA AACGCTCGAT
TTTCTTAAGT CCGGCATTGC CACGCGTAAC GCCCACTTCA ACCGCATGAT TGAGCAGATC
GAAAAAGTGG CGATCAAATC CCGCGCACCG ATCCTGCTCA ACGGCCCAAC CGGTGCGGGA
AAGTCGTTTC TGGCACGACG CATCTTCGAG TTAAAACAGG CGCGGCATCA GTTTAGCGGC
GCGTTTGTGG AGGTGAACTG TGCCACTCTG CGCGGCGATA CCGCCATGTC AGCGCTGTTT
GGTCATGTGA AAGGCGCGTT TACCGGGGCG CGGGAGTCGC GGGAAGGATT ATTACGCAGC
GCCAACGGCG GGATGTTATT TCTTGATGAG ATTGGCGAAC TGGGCGCAGA CGAACAGGCA
ATGCTGCTGA AAGCCATTGA AGAGAAAACC TTTTATCCGT TTGGCAGCGA TCGCCAGGTG
AGTAGCGACT TTCAGCTGAT CGCCGGAACG GTGCGCGATT TGCGTCAGCT GGTTGCCGAA
GGCAAATTCC GCGAAGATCT GTACGCGCGG ATCAATCTCT GGACCTTCAC CCTGCCGGGG
CTACGCCAGC GCCAGGAAGA TATTGAACCT AACCTGGATT ATGAAGTGGA GCGCCACGCC
TCACTTACCG GCGACAGCGT GCGTTTTAAC ACCGAAGCGC GGCGCGCCTG GCTGGCCTTT
GCAACATCAT CTCAGGCGGC ATGGCGCGGT AACTTTCGCG AGCTTTCTGC CAGCGTCACG
CGAATGGCAA CCTTTGCCAC TAGCGGACGC ATCACTCTGG AAGTGGTTGG AGATGAGATA
AACCGTCTGC GCTATAACTG GCAGGAGAGT CGTCCTTCCG CGCTTACGGC GTTGCTGGGC
GCTGAGGCAG AAAACATCGA CCTCTTTGAC CGTATGCAAC TGGAACATGT TATAGCTATC
TGCCGGCAGG CAAAGTCGCT TTCCGCTGCC GGACGCCAGC TTTTTGACGT TTCGCGCCAG
GGGAAAGCCA GCGTCAACGA CGCGGATCGG CTACGCAAAT ACCTGGCGCG TTTTAATCTG
ACGTGGGAAG CCGTGCAGGA TCAGCACAGC TCCAGTTGA
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| Protein sequence | MRKTVAFGFV GTVLDYAGRG SQRWSKWRPS LCLCQQESLV INRLELLHDA RSRSLFETLK
RDIANVSPET KVVGVEIELH NPWDFEEVYA CLHDFARGYA FEPDKEDYLI HITTGTHVAQ
ICWFLLAEAR YLPARLIQSS PPRKKEQPRG AGEVTIIDLD LSRYNAIASR FAEERQQTLD
FLKSGIATRN AHFNRMIEQI EKVAIKSRAP ILLNGPTGAG KSFLARRIFE LKQARHQFSG
AFVEVNCATL RGDTAMSALF GHVKGAFTGA RESREGLLRS ANGGMLFLDE IGELGADEQA
MLLKAIEEKT FYPFGSDRQV SSDFQLIAGT VRDLRQLVAE GKFREDLYAR INLWTFTLPG
LRQRQEDIEP NLDYEVERHA SLTGDSVRFN TEARRAWLAF ATSSQAAWRG NFRELSASVT
RMATFATSGR ITLEVVGDEI NRLRYNWQES RPSALTALLG AEAENIDLFD RMQLEHVIAI
CRQAKSLSAA GRQLFDVSRQ GKASVNDADR LRKYLARFNL TWEAVQDQHS SS
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