Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3353 |
Symbol | ttdR |
ID | 6142651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 3430842 |
End bp | 3431774 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641618182 |
Product | transcriptional activator TtdR |
Protein accession | YP_001745332 |
Protein GI | 170682678 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.577142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAATA GCTGGCCTTT AGCCAAAGAT TTGCAGGTAC TGGTAGAAAT CGTCCACAGC GGGAGTTTTA GCGCCGCAGC GGCGACGCTT GGGCAGACGC CTGCATTTGT CACCAAGCGG ATCCAAATCC TTGAAAATAC GCTGGCAACA ACGCTGCTGA ACCGCTCCGC TCGCGGCGTG GCGCTGACTG AAAGTGGCCA ACGTTGTTAC GAGCATGCGC TGGAAATCCT CACCCAATAT CAGCGACTGG TCGATGACGT CACGCAAATC AAAACGCGCC CGGAGGGGAT GATTCGTATT GGTTGCAGTT TTGGTTTTGG GCGCAGCCAT ATTGCGCCAG CCATTACCGA ACTGATGCGC AATTATCCTG AGTTACAGGT GCATTTTGAA TTGTTCGATC GGCAAATTGA TTTAGTGCAG GATAATATTG ATCTGGATAT TCGTATTAAT GACGAAATTC CTGATTATTA TATTGCGCAT CTGTTAACGA AAAATAAAAG AATATTATGC GCAGCACCTG AGTATCTGCA AAAATATCCG CAGCCACAAT CCTTACAGGA ATTAAGTCGT CATGATTGTC TGGTGACCAA AGAGCGCGAT ATGACCCACG GAATATGGGA GTTGGGGAAC GGTCAGGAGA AAAAATCGGT GAAGGTAAGC GGGCATCTTT CCTCCAATAG CGGCGAGATA GTGTTGCAAT GGGCGCTGGA GGGCAAAGGG ATTATGTTGC GTTCCGAGTG GGATGTGTTG CCGTTTCTGG AGAGTGGCAA ACTGGTGCGA GTATTGCCGG AGTATGCACA AAGCGCCAAT ATCTGGGCTG TTTACCGGGA GCCGCTCTAT CGCAGCATGA AATTACGTGT CTGCGTGGAA TTTCTGGCGG CATGGTGCCA GCAACGGCTG GGCAAGCCCG ACGAAGGCTA TCAGGTCATG TAA
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Protein sequence | MLNSWPLAKD LQVLVEIVHS GSFSAAAATL GQTPAFVTKR IQILENTLAT TLLNRSARGV ALTESGQRCY EHALEILTQY QRLVDDVTQI KTRPEGMIRI GCSFGFGRSH IAPAITELMR NYPELQVHFE LFDRQIDLVQ DNIDLDIRIN DEIPDYYIAH LLTKNKRILC AAPEYLQKYP QPQSLQELSR HDCLVTKERD MTHGIWELGN GQEKKSVKVS GHLSSNSGEI VLQWALEGKG IMLRSEWDVL PFLESGKLVR VLPEYAQSAN IWAVYREPLY RSMKLRVCVE FLAAWCQQRL GKPDEGYQVM
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