| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3248 |
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| Symbol | gspC |
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| ID | 6145363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3320207 |
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| End bp | 3321166 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618078 |
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| Product | putative type II secretion protein GspC |
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| Protein accession | YP_001745228 |
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| Protein GI | 170681120 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGCGGG TTGTTTTTCG TGACGCACGA ATTTATCTCA TTCAATGGCT GACAAAAATT
CGTCACACTC TTAACCAGAG ACAATCTCTT AATACAGACA AAGAGCATCT GCGCAAAATT
GCACGCGGGA TGTTCTGGCT GATGCTGCTT ATTATTTCTG CAAAAGTGGC GCATTCACTC
TGGCGCTATT TCTCTTTTTC TGCGGAATAT ATGGCTGTTT CCCCATCGGC GAATAAACCG
CTCCGTGCGG ATGCAAAAGC GTTCGATAAA AATGACGTGC AATTAATCAG CCAGCAAAAC
TGGTTTGGCA AATATCAGCC CGTCGCCACG CCGGTAAAAC AACCCGAACC TGCACCTGTG
GCCGAAACGC GTCTTAATGT GGTGTTGCGT GGGATCGCCT TTGGTGCCAG ACCCGGCGCG
GTTATTGAAG AAGGTGGTAA ACAGCAGGTC TATTTGCAGG GTGAAACGCT TGGCTCGCAC
AACGCAGTGA TTGAGGAAAT CAACCGCGAC CATGTGATGC TGCGCTATCA GGGAAAAATG
GAACGTCTGA GTCTGGCAGA AGAGAAGCGT CCCACCATAG CCGTGACCAG CAAAAAAGCC
GTCAGCGACG AAGCAAAGCA AGCTGTTGCT GAGCCTGCTG CCAGTGCGCC AGTTGAGATC
CCGGCTGCCG TGCGTCAGGC ACTGGCGAAA GATCCGCAGA AAATTTTTAA CTATATCCAG
CTTACGCCTG TGCGTAAGGA AGGGATTGTC GGTTATGCAG TGAAACCGGG GGCAGATCGT
TCTCTGTTCG ATGCCAGCGG TTTTAAGGAA GGCGATATCG CCATTGCGCT AAATCAGCAG
GATTTCACTG ATCCACGAGC AATGATTGCT CTGATGCGGC AGTTACCTTC AATGGATTCC
ATTCAACTTA CGGTTTTACG CAAGGGTGCG CGCTACGACA TTTCCATCGC GCTGCGCTAA
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| Protein sequence | MARVVFRDAR IYLIQWLTKI RHTLNQRQSL NTDKEHLRKI ARGMFWLMLL IISAKVAHSL
WRYFSFSAEY MAVSPSANKP LRADAKAFDK NDVQLISQQN WFGKYQPVAT PVKQPEPAPV
AETRLNVVLR GIAFGARPGA VIEEGGKQQV YLQGETLGSH NAVIEEINRD HVMLRYQGKM
ERLSLAEEKR PTIAVTSKKA VSDEAKQAVA EPAASAPVEI PAAVRQALAK DPQKIFNYIQ
LTPVRKEGIV GYAVKPGADR SLFDASGFKE GDIAIALNQQ DFTDPRAMIA LMRQLPSMDS
IQLTVLRKGA RYDISIALR
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