| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3117 |
|---|
| Symbol | rafY1 |
|---|
| ID | 6147373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3204942 |
|---|
| End bp | 3206336 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641617984 |
|---|
| Product | glycoporin RafY |
|---|
| Protein accession | YP_001745134 |
|---|
| Protein GI | 170680709 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.303437 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGT TACTTTTGGG TTTATCTCTT TTTTTATTAC TGGAATACAA TGCGTGTGCA
GCAAAAACAG GGGGGCTAAC GCTTGAACAA AGAATGGCAT TGCTGGAAGA ACGCCTGGAA
GCTGCAGAAA AAAGGGCGGA AAAAGCAGAA AGAATGTTAA AGAGTTTTGA TATAGAACAA
CATTCTGAAA TACGTCAAAT TAGTTCAGAG CAGAATAAAA AAGATGCTAA CAGCTATGCA
GTAGTTGAGT CAACAAAAGA AAAAACATCT TCTCCAGGTT TTCTGCTCTC TGGTTACAAT
GATTTGAAGT TTTATGGTGA TGTGGAGTTT AATATAGATG CTGCCAGTAA ACCCGGTCAG
TTAGTAATGA TAAGTTCCGG GGCGAACAGT GAGTCAGTGA ATGAACGGTG GGACCTTAAT
GGCCGTATTC TATTAGGTTT TGACGGTACC CGTAAGCTTG ATAATGGTTA TTTCGCTGGA
TTTTCAGCAC AACCACTGGC GGATATGCAC GGTTCAGTGA ATATTGATGA TGCATTATTC
TTTTTTGGAA AAGATGACGA GTGGAAAGTG AAAGTCGGTC GTTTTGAAGC TTACGATATG
TTCCCTCTAA ATCAGGATAC TTTCATTGAG TATTCCGGTA ATACAGCTAA TGATATTTAT
GCTGATGGCC GTGGTTATAT CTATATGATG AAAGAGGGAC GCGGTCGTTC TGACGCTGGT
GGTAATTTCC TCATCAGTAA ACAACTCGAT AACTGGTATT TTGAGTTAAA CACGTTACTT
GAAGACGGAA CATCTTTATA TAATAACGGT AATTATCATG GACGATATAT GGAGCAGCAG
AAAAATGTCG CTTATCTGCG CCCGGTAATT GCCTGGTCGC CAACGGAAGA ATTCACAGTC
TCCGCAGCGA TGGAAGCGAA CGTGGTAAAA AATGCTTATG GCTATACCGA TAATAAGGGG
AATTTTGTCG ATCAGTCCAA TCGTTCCGGT TATGGTATTA GCATGACATG GAACGGTCTG
AAAACAGATC CGGAAAATGG CATCGTGGTT ACTCTTAATA CCGCCTATTT GGATGCCAGT
AATGAGAAAG ATTTCACTGC CAGTATTAAT GCTCTGTGGA AACGTTTCGA ACTGGGTTAT
ATCTACGCAC ATAATAAGAT TGATGAATTT AGTGGTGTCG TGTGTAATAA TGGTTGCTGG
ATTGATGGTG AAGGAATATA CAACATTCAC ACCATTCATG CATCTTATCA GTTTGCTAAT
GTGATGGATA TGGAGAACTT TAATATTTAC CTCGGGGCTT ATTACTCAAT TCTGGATAGT
AACTGTAGAT ATAGTAATTG TGACATTACC GATGATCGTT ACGGTGCCCG ATTACGTTTC
AAATACTTTT TTTGA
|
|---|
| Protein sequence | MNKLLLGLSL FLLLEYNACA AKTGGLTLEQ RMALLEERLE AAEKRAEKAE RMLKSFDIEQ
HSEIRQISSE QNKKDANSYA VVESTKEKTS SPGFLLSGYN DLKFYGDVEF NIDAASKPGQ
LVMISSGANS ESVNERWDLN GRILLGFDGT RKLDNGYFAG FSAQPLADMH GSVNIDDALF
FFGKDDEWKV KVGRFEAYDM FPLNQDTFIE YSGNTANDIY ADGRGYIYMM KEGRGRSDAG
GNFLISKQLD NWYFELNTLL EDGTSLYNNG NYHGRYMEQQ KNVAYLRPVI AWSPTEEFTV
SAAMEANVVK NAYGYTDNKG NFVDQSNRSG YGISMTWNGL KTDPENGIVV TLNTAYLDAS
NEKDFTASIN ALWKRFELGY IYAHNKIDEF SGVVCNNGCW IDGEGIYNIH TIHASYQFAN
VMDMENFNIY LGAYYSILDS NCRYSNCDIT DDRYGARLRF KYFF
|
|---|
| |