| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3116 |
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| Symbol | rafD |
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| ID | 6143148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3203317 |
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| End bp | 3204747 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641617983 |
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| Product | raffinose invertase |
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| Protein accession | YP_001745133 |
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| Protein GI | 170683153 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1621] Beta-fructosidases (levanase/invertase) |
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| TIGRFAM ID | [TIGR01322] sucrose-6-phosphate hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.0587653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAGC GTCTTGCTTT GGCACAGTCT GCCCTTGAAA AACTTTGCGC ACGTCGTGGT
AATGCCTGGT ACCCGATTTT TCATCTGGCT CCACCTGCCG GCTGGATGAA TGATCCAAAT
GGCCTTATTT ACTTCAATGG GCGTTACCAT GCGTTCTTCC AGCATCATCC TGCAAGCGCA
TATCAGGGGC CAATGCACTG GGGGCATGCC ACCAGTACCG ACATGTTGCA CTGGCAACAC
GAACCTATCG CGCTGGCACC CGGAGATAAA TATGATCGTG ATGGCTGTTT TTCAGGGAGT
GCCGTGGATG ATGATGGCGT GCTATCACTT ATTTATACTG GTCATATTTG TCTCGATGAT
CGTGGTAATG ACAGCATTAT CCGTGAAGTA CAGTGTCTGG CTACAAGTCA TGATGGTATT
CACTTTGAGA AGCAGGGCTG TGTGCTGACA CCTCCGGAAG GTATAATGCA TTTCCGTGAT
CCCAAAGTCT GGCACGAAGA CGGCTCCTGG TGGATGGTCA TTGGTGCCCG GGACGCTTCT
GACAATGGGC AAGTTCTGTT GTATCGCGGG ACATCTTTGC GGGACTGGCA TCTGGAGCAT
GTTCTTGCTC ATTCCGCAGC CGGAAAAAGT TATATGTGGG AATGCCCCGA TTTCTTCAGG
TGTGGTAATT TTCACTGGCT GATGTTCTCA CCACAGGGGA TGCCCCCTTC CGGTTATCGG
TTCCGTAACC TTTTTCAGAG CGGTGTGTTG GCAGGGAGCT GGAAGCCTGG TTCTGTCTTT
GCGCTGAAAG GGGGATTTGA AGAGCTGGAT TATGGTCATG ACTTTTATGC TCCACAGTCC
ATGCTGGCTG AGGACGGCAG GCGTATCATT ATGGCATGGA TGAATATGTG GGATTCACCC
GTGCCCACCC GCAGTGAAGC CTGGGCAGGA TGTCTGACGC TGCCCAGAGA GGTTTTTGAG
CGCGATGGCC GGCTGTGCCA GCGACCTGTG CGTGAAGTCG AATCTCTGCG CAAAAAATGC
CAGCCATTAT CCCCTGTAAG GTTACAGGGT TTGCAATTAC TGACCGAAAA TGTACAGGCC
GCAGAATTAT TGGTGACGTG GCATACGGTT GACAGTCATG CGGAGCACTA TGGCGTCCGC
CTTGGAGACG GTCTGCGACT TTATGTGGAT AATCAGGCCG GGCGATTGGT ACTGTGGCGC
TATTACCCTG AGGAAGGGTT GGATGGTTAC CGCAGTGTTG AACTTCCTGA TACAGAATAT
CTGACTCTTC GTATTTTCTT GGATCGTTCA TCTGTTGAAG TGTTTGTTAA CGATGGTGAG
GCAACCTTAT CAAGTCGTAT TTATCCGCAA GCGGACTCGA GACAATTATC GTTATATGCC
GCTCATGGCG ATGCGATATT AACTGATGGC ACTTTATGGA TGCTGACCTG A
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| Protein sequence | MKQRLALAQS ALEKLCARRG NAWYPIFHLA PPAGWMNDPN GLIYFNGRYH AFFQHHPASA
YQGPMHWGHA TSTDMLHWQH EPIALAPGDK YDRDGCFSGS AVDDDGVLSL IYTGHICLDD
RGNDSIIREV QCLATSHDGI HFEKQGCVLT PPEGIMHFRD PKVWHEDGSW WMVIGARDAS
DNGQVLLYRG TSLRDWHLEH VLAHSAAGKS YMWECPDFFR CGNFHWLMFS PQGMPPSGYR
FRNLFQSGVL AGSWKPGSVF ALKGGFEELD YGHDFYAPQS MLAEDGRRII MAWMNMWDSP
VPTRSEAWAG CLTLPREVFE RDGRLCQRPV REVESLRKKC QPLSPVRLQG LQLLTENVQA
AELLVTWHTV DSHAEHYGVR LGDGLRLYVD NQAGRLVLWR YYPEEGLDGY RSVELPDTEY
LTLRIFLDRS SVEVFVNDGE ATLSSRIYPQ ADSRQLSLYA AHGDAILTDG TLWMLT
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