| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2544 |
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| Symbol | nupC |
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| ID | 6143290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2603776 |
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| End bp | 2604978 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641617416 |
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| Product | nucleoside transporter NupC |
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| Protein accession | YP_001744587 |
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| Protein GI | 170683520 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG1972] Nucleoside permease |
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| TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000306295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCGCG TCCTTCATTT TGTACTGGCA CTTGCCGTTG TTGCGATTCT CGCACTGCTG
GTAAGCAGCG ACCGCAAAAA AATTCGTATC CGTTATGTTA TTCAACTGCT TGTTATCGAA
GTGTTACTGG CGTGGTTCTT CCTGAACTCC GACGTTGGTT TAGGCTTCGT GAAAGGCTTC
TCCGAAATGT TCGAAAAACT GCTCGGATTT GCCAACGAAG GGACTAACTT CGTCTTTGGT
AGCATGAATG ATCAAGGCCT GGCATTCTTC TTTCTGAAAG TGCTGTGCCC AATCGTCTTT
ATCTCTGCAT TGATCGGTAT TCTCCAGCAC ATTCGCGTGT TGCCAGTGAT TATCCGCGCA
ATTGGTTTCC TGCTTTCCAA AGTCAACGGT ATGGGCAAAC TGGAATCCTT TAACGCCGTC
AGCTCCCTGA TTCTGGGTCA GTCTGAAAAC TTTATTGCCT ATAAAGATAT CCTCGGCAAA
ATCTCCCGCA ATCGTATGTA CACCATGGCA GCAACGGCGA TGTCCACCGT GTCGATGTCC
ATCGTTGGTG CATACATGAC CATGCTGGAG CCGAAATATG TCGTTGCGGC GCTGGTACTG
AACATGTTCA GCACCTTTAT CGTGCTGTCG CTGATCAACC CTTACCGTGT TGATGCCAGT
GAAGAAAACA TTCAGATGTC CAACCTGCAC GAAGGTCAGA GCTTCTTCGA AATGCTGGGT
GAATACATTC TGGCAGGTTT CAAAGTTGCC ATTATCGTTG CCGCAATGCT GATCGGCTTT
ATCGCCCTGA TCGCCGCGCT GAACGCACTG TTTGCTACCG TGACTGGCTG GTTTGGCTAC
AGCATCTCCT TCCAGGGCAT CCTGGGCTAC ATCTTCTATC CGATTGCATG GGTGATGGGT
GTTCCTTCCA GTGAAGCACT GCAAGTGGGC AGTATCATGG CGACCAAACT GGTTTCCAAC
GAGTTCGTTG CGATGATGGA TCTGCAGAAA ATTGCTTCCA CGCTCTCTCC GCGTGCTGAA
GGCATCATCT CTGTGTTCCT GGTTTCCTTC GCTAACTTCT CATCAATCGG GATTATCGCA
GGTGCAGTTA AAGGCCTGAA TGAAGAGCAA GGTAACGTGG TTTCTCGCTT CGGTCTGAAA
CTGGTTTACG GCTCTACCCT GGTGAGTGTG CTGTCTGCGT CAATCGCAGC ACTGGTGCTG
TAA
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| Protein sequence | MDRVLHFVLA LAVVAILALL VSSDRKKIRI RYVIQLLVIE VLLAWFFLNS DVGLGFVKGF
SEMFEKLLGF ANEGTNFVFG SMNDQGLAFF FLKVLCPIVF ISALIGILQH IRVLPVIIRA
IGFLLSKVNG MGKLESFNAV SSLILGQSEN FIAYKDILGK ISRNRMYTMA ATAMSTVSMS
IVGAYMTMLE PKYVVAALVL NMFSTFIVLS LINPYRVDAS EENIQMSNLH EGQSFFEMLG
EYILAGFKVA IIVAAMLIGF IALIAALNAL FATVTGWFGY SISFQGILGY IFYPIAWVMG
VPSSEALQVG SIMATKLVSN EFVAMMDLQK IASTLSPRAE GIISVFLVSF ANFSSIGIIA
GAVKGLNEEQ GNVVSRFGLK LVYGSTLVSV LSASIAALVL
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