| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1980 |
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| Symbol | |
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| ID | 6144394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1999462 |
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| End bp | 2001783 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641616856 |
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| Product | autotransporter (AT) family porin |
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| Protein accession | YP_001744032 |
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| Protein GI | 170683308 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0125961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGGGTA ATAATACGAT TGTCACAACG GGGGATTACT CAATTGGTTT GCTAAGTCAA
ACGAATGGAA ACCTGAATAC TGATACCATA ATAAGAGTCA ACACTGACGG TTCGGTTAAC
CCCCATTTAT CTGACGAAGG TAATACTTTT ATTGTTACTG CGGGTAATCA CGCAGTCGGC
GTTCTTGCTT GTGCATCTCC CGGAAGCGCG CGTGCGTGTG TATCTTCTCT TGATGAAGAA
AGTACTGCCG ATACAGGAAG TAATGAAAAT AACGCCAAAG CAAAACTGGA TATGGCAAAA
GGGGAGATAA CAACCCACGG AACAGAAAGT TATGCCGCTT ACGCTAATGG CACTGTCGTC
AAGGCGGGTA GCAAGCTTGA TTATACCAAT GCCAGCGTTA CATTAACCGA TGTTGATATT
ACCACGCATG GGGACAATGC TCATGCCATC GCTGCTCGCC AGGGGACTGT TTCATTTAAC
CAGGGAGAAA TTCATACAAC GGGTCCTGAC GCCGCGATTG CTAAAATTTA TAATGGCGGC
AAGGTGACGC TGAAAAATAC ATCTGCAGTC GCGCATCAGG GGGCTGGAAT TGTGCTGGAG
TCTTCCATAA ATGGTCAGGA AGCAACGGTA GATATTTTAT CAGGTAGCTC ACTACGGTCA
GCAAATGAAA TCCTCTACAA TAAAAATGAG ACGAGTAACG TGACCATTAC GGATAGTGAG
GTATCATCGG CTGCAGATGT TTTTATTAAT AATATTAAAG GTCATTTGGT CATCGATGCA
TCTAATTCAA AAATAACGGG TTCAGCCAAT CTTTCAACAG ATGATAGCAC TCATACCTAT
CTGTCGCTTT CAGATAATAG TACCTGGGAT ATTAAAACTG ACTCAACGGT GAGCAAGCTC
ACGGTTGACA ATAGTACGGT CTATATTTCC CGGGCAGATG GAAAGGCTTT CGAACCAACA
AGATTAACAA TAACTGAAAA TTACGTTGGT AATAATGGCG TATTGCATCT CAGAACTGAA
TTGGGTGATG ATAATTCAGC TACGGATAAA GTCGTTATTA ATGGAAATAC CTCTGGAACA
ACCCGAGTTA AAGTTACCAA TGCTGGCGGC AGCGGGGCTT ACACGTTAAA TGGGATAGAG
ATTATCAGCG TTGAGGGGGA ATCAAATGGA GAATTTATTA AGGATTCGAG GATTTTCGCC
GGTGCCTACG AATATTCATT AACCCGAGGT AATACCGAAG CGACCAATAA AAACTGGTAT
CTGACTAACT TCCAGGCAAC GAGCGGCGGT GAAACAAACT CCGGAGGAAG TTCAGCGCCT
ACTGTTGCGC CTACCCCCGT CCTGCGCCCC GAAGCTGGAA GTTACGTCGC CAACCTGGCA
GCCGCTAACA CTCTTTTTGT TATGCGTCTG AACGATCGTG CAGGTGAAAC GCGCTACATC
GATCCTGTAA CTGAACAGGA GCGTTCAAGC CGACTTTGGC TACGTCAAAT TGGCGGGCAT
AATGCCTGGC GTGACAGCAA CGGACAGTTG AGAACGACCT CGCATCGCTA CGTCTCGCAG
TTAGGGGCCG ATCTGTTAAC CGGTGGTTTT ACCGACAGTG ACAGTTGGCG TTTGGGAGTG
ATGGCTGGTT ATGCCCGCGA CTACAACTCA ACTCATTCCA GCGTGTCGGA TTATCGTTCG
AAAGGGAGTG TCAGAGGCTA TAGCGCAGGG CTGTATGCCA CCTGGTTTGC CGATGACATC
AGTAAAAAAG GCGCATACAT TGACGCCTGG GCGCAATATA GCTGGTTTAA AAACTCGGTG
AAAGGGGATG AGTTAGCCTA TGAATCCTAT AGCGCGAAAG GCGCAACCGT CTCGCTGGAA
GCGGGTTACG GCTTTGCCCT GAATAAATCC TTTGGTCTGG AAGCGGCGAA ATATACGTGG
ATCTTCCAGC CACAGGCACA GGCTATCTGG ATGGGCGTCG ATCATAATGC GCACACGGAA
GCCAATGGCT CACGTATTGA GAATGACGCA AATAACAACT TCCAGACCCG ACTTGGTTTC
CGCACCTTTA TTCGTACTCA GGAGAAAAAC AGCGGTCCTC ACGGTGACGA CTTTGAACCT
TTTGTTGAAA TGAACTGGAT CCATAACAGT AAAGATTTTG CTGTCTCAAT GAATGGTGTG
AAAGTCGAAC AAGACGGGGC GCGTAATCTG GGGGAAATTA AACTTGGCGT AAATGGCAAT
CTGAATCCGT CGGCCAGCGT CTGGGGTAAT GTGGGCGTGC AGCTGGGTGA TAATGGCTAC
AATGACACCG CAATGATGGT GGGCCTGAAA TATAAGTTCT GA
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| Protein sequence | MQGNNTIVTT GDYSIGLLSQ TNGNLNTDTI IRVNTDGSVN PHLSDEGNTF IVTAGNHAVG
VLACASPGSA RACVSSLDEE STADTGSNEN NAKAKLDMAK GEITTHGTES YAAYANGTVV
KAGSKLDYTN ASVTLTDVDI TTHGDNAHAI AARQGTVSFN QGEIHTTGPD AAIAKIYNGG
KVTLKNTSAV AHQGAGIVLE SSINGQEATV DILSGSSLRS ANEILYNKNE TSNVTITDSE
VSSAADVFIN NIKGHLVIDA SNSKITGSAN LSTDDSTHTY LSLSDNSTWD IKTDSTVSKL
TVDNSTVYIS RADGKAFEPT RLTITENYVG NNGVLHLRTE LGDDNSATDK VVINGNTSGT
TRVKVTNAGG SGAYTLNGIE IISVEGESNG EFIKDSRIFA GAYEYSLTRG NTEATNKNWY
LTNFQATSGG ETNSGGSSAP TVAPTPVLRP EAGSYVANLA AANTLFVMRL NDRAGETRYI
DPVTEQERSS RLWLRQIGGH NAWRDSNGQL RTTSHRYVSQ LGADLLTGGF TDSDSWRLGV
MAGYARDYNS THSSVSDYRS KGSVRGYSAG LYATWFADDI SKKGAYIDAW AQYSWFKNSV
KGDELAYESY SAKGATVSLE AGYGFALNKS FGLEAAKYTW IFQPQAQAIW MGVDHNAHTE
ANGSRIENDA NNNFQTRLGF RTFIRTQEKN SGPHGDDFEP FVEMNWIHNS KDFAVSMNGV
KVEQDGARNL GEIKLGVNGN LNPSASVWGN VGVQLGDNGY NDTAMMVGLK YKF
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