| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1734 |
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| Symbol | ydcS |
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| ID | 6144278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1738437 |
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| End bp | 1739582 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616610 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | YP_001743788 |
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| Protein GI | 170681458 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000000404923 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAAGA TTTTTGCCCG CAGCAGCCTG TGTGCGCTCA CCATGACAAT AATGACCGCT
CACGCCGCCG AACCGCCTAC CAATTTAGAT AAACCGGAAG GGCGACTGGA TATTATCGCC
TGGCCGGGAT ACATCGAACG CGGACAAACT GATAATCAAT ACGACTGGGT AACGCAATTC
GAAAAAGAGA CAGGCTGCGC GGTGAATGTG AAAACCGCCG CGACTTCCGA TGAAATGGTC
AGTCTGATGA CCAAAGGGGG TTACGATCTG GTTACGGCAT CCGGCGATGC CTCGCTGCGC
CTGATTATGG GCAAACGCGT GCAGCCGATT AATACCGCAT TGATTCCCAA CTGGAAAGCG
CTCGATCCGC GCGTGGTTAA AGGCGACTGG TTTAACGTTG GCGGCAAAGT TTACGGCACA
CCTTACCAAT GGGGGCCGAA CCTGCTGATG TACAACACTA AAACCTTCCC GACGCCGCCG
AATAGCTGGC AAGTGGTTTT TGTTGAGCAG AATCTGCCGG ACGGCAAGAG CAATAAAGGC
CGCGTTCAGG CTTATGATGG CCCTATCTAC ATTGCGGACG CTGCGTTGTT CGTTAAAGCC
ACTCAGCCGC AGTTGGGCAT CAGCGATCCG TATCAACTCA CCGAAGAACA GTACCAGGCG
GTGCTGAAAG TGCTGCGCGA TCAACATAGT TTGATCCATC GCTACTGGCA TGACACTACC
GTGCAAATGA GCGATTTCAA AAACGAGGGT GTAGTTGCTT CCAGTGCATG GCCCTATCAG
GCCAACGCCC TGAAAGCCGA AGGCCAGCCT GTCGCTACCG TTTTCCCGAA AGAGGGCGTT
ACCGGTTGGG CTGACACCAC CATGCTACAT AGCGAAGCGA AACATCCGGT TTGCGCCTAC
AAATGGATGA ACTGGTCATT AACCCCAAAA GTGCAGGGCG ATGTGGCGGC CTGGTTTGGC
TCGCTACCAG TAGTGCCGCA AGGGTGTAAA GCCAGTCCGT TATTAGGCGA GAAAGGTTGT
GAAACAAACG GTTTTAACTA TTTCGATAAA ATCGCCTTCT GGAAAACGCC TATAGCAGAA
GGGGGCAAGT TTGTTCCCTA CAGTCGCTGG ACGCAGGATT ACATTGCCAT TATGGGTGGT
CGCTAA
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| Protein sequence | MSKIFARSSL CALTMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DNQYDWVTQF
EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKA
LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP NSWQVVFVEQ NLPDGKSNKG
RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRDQHS LIHRYWHDTT
VQMSDFKNEG VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY
KWMNWSLTPK VQGDVAAWFG SLPVVPQGCK ASPLLGEKGC ETNGFNYFDK IAFWKTPIAE
GGKFVPYSRW TQDYIAIMGG R
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