Gene EcSMS35_1250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1250 
Symbol 
ID6146622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand- 
Start bp1248888 
End bp1249556 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content52% 
IMG OID641616128 
Producthypothetical protein 
Protein accessionYP_001743311 
Protein GI170679801 
COG category[S] Function unknown 
COG ID[COG2135] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.336895 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.442169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTGGAC GCTTTGCCCA ATCCCAAACG CGTGAAGATT ACCTTGCGCT TCTCGCGGAA 
GATATTGAAC GCGATATTCC CTATGATCCC GAACCCATTG GCAGATACAA CGTCGCGCCG 
GGAACCAAAG TCCTACTGCT CAGTGAACGT GATGAACACC TTCATCTGGA TCCGGTTTTC 
TGGGGATATG CTCCCGGATG GTGGGATAAA CCGCCGCTGA TTAACGCCCG CGTAGAAACT 
GCGGCGACCA GTCGTATGTT TAAACCGCTC TGGCAACATG GTCGGGCAAT CTGTTTTGCC 
GATGGCTGGT TTGAGTGGAA AAAAGAAGGC GACAAAAAGC AGCCTTATTT TATCTATCGT 
ACTGATGGAC AACCTGTTTT TATGGCCGCG ATAGGCAGCA CACCATTCGA GCGCGGTGAC 
GAAGCCGAAG GATTTTTGAT TGTCACTGCG GCGGCAGATC AAGGTCTGGT GGATATTCAT 
GACCGCCGCC CACTGGTACT CTCGCCAGAT GCTGCGCGGG AATGGATGCG GCAAGATATT 
GGCGGTAAAG AAGCCTCAGA AATCGCTACC AGTGGTTGTG TGCCAGCAAA CCAGTTCACC 
TGGCACCCGG TATCGCGCGC GGTGGGTAAT GTTAAAAACC AGGGCGCGGA GTTAATTCAA 
CCTGTTTGA
 
Protein sequence
MCGRFAQSQT REDYLALLAE DIERDIPYDP EPIGRYNVAP GTKVLLLSER DEHLHLDPVF 
WGYAPGWWDK PPLINARVET AATSRMFKPL WQHGRAICFA DGWFEWKKEG DKKQPYFIYR 
TDGQPVFMAA IGSTPFERGD EAEGFLIVTA AADQGLVDIH DRRPLVLSPD AAREWMRQDI 
GGKEASEIAT SGCVPANQFT WHPVSRAVGN VKNQGAELIQ PV