Gene EcSMS35_1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1083 
Symbol 
ID6147007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1098207 
End bp1098965 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content40% 
IMG OID641615969 
Producthypothetical protein 
Protein accessionYP_001743161 
Protein GI170682124 
COG category[S] Function unknown 
COG ID[COG5426] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.842688 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAACA CCAAAAAATC ACTAAAGGTG CTCTTTATTG GAGAATCCTG GCATATTCAT 
ATGATTCATT CAAAAGGATA TGACAGTTTT ACCTCAAGTA AATATGAAGA AGGTGCGACC
TGGTTACTCC AATGTCTGAA AAATAGTCAG GTAGATGTCA CCTATATGCC GGCACATACG
GTACAAATTG CCTTCCCTGA AGATGTGGCA CAGTTAGAAC AATATGATGC CATCGTTATT
AGTGATATTG GTAGTAATAC TTTCCTGCTA CAAAATGATA CTTTTTATCA GCTTCGCATA
AAACCAAACG CTCTCGAACT GATTAAAGAA TATGTGAATA ACGGTGGTGG GTTATTGATG
ATTGGCGGCT ATCTCTCATT CATGGGAATT GAAGCAAAAG CCAATTATAA AAATACAGTT
CTGGCTGATG TGCTCCCGGT TACGATGTTA GATGGTGACG ATCGTGTCGA AAAACCAGAG
GGTGTTATTG CACAGCCATC ACAACCTGAC CATCCGGTTA TTAAAGGGTT CTCTGAATAT
CCTTTTTTCC TAGGTTATAA CCGGGCGATC GCTAAAGAAA ATGCTGAGGT GGTATTAACA
ATAAACAACG ATCCATTACT GGTCTTTGGT AACTATCACA ACGGGAAAAT AGCCTGCTTT
ATGAGTGACT GTTCACCGCA CTGGGGTACA CAGCAGTTTA TGTCCTGGCC GTTCTATACC
GCGTTGTGGG TAAATATACT GACTCATATT GCAAGATAA
 
Protein sequence
MNNTKKSLKV LFIGESWHIH MIHSKGYDSF TSSKYEEGAT WLLQCLKNSQ VDVTYMPAHT 
VQIAFPEDVA QLEQYDAIVI SDIGSNTFLL QNDTFYQLRI KPNALELIKE YVNNGGGLLM
IGGYLSFMGI EAKANYKNTV LADVLPVTML DGDDRVEKPE GVIAQPSQPD HPVIKGFSEY
PFFLGYNRAI AKENAEVVLT INNDPLLVFG NYHNGKIACF MSDCSPHWGT QQFMSWPFYT
ALWVNILTHI AR