| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0109 |
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| Symbol | pilC |
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| ID | 6142966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 121038 |
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| End bp | 122240 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641615010 |
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| Product | type IV pilin biogenesis protein |
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| Protein accession | YP_001742226 |
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| Protein GI | 170681709 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0111048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.534441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGTA AGCAACTCTG GCGCTGGCAT GGCATAACCG GCGACGGCAA TGCGCAAGAT
GGGATGCTAT GGGCTGAGAG CCGTGCTTTG CTGCTCATAG CACTACAGCA ACAGATGGTT
ACCCCACTTA GCCTGAAGCG AATCGCCATC AATTCTGCGC AGTGGCGAGG AGATAAAAGC
GCGGAAGTCA TTCATCAACT GGCGACGCTA CTCAAAGCCG GGTTAACGCT TTCTGAAGGG
CTGGCACTGC TCGCGGAACA GCATCCCAGT AAGCAATGGC AAGCGTTGCT GCAATCGCTG
GCGTACGATC TCGAACAGGG CATTGCTTTT TCCAATGCCT TATTACCCTG GTCAGAGGTA
TTTCCGCCGC TCTATCAGGC GATGATCCGC ACGGGTGAAC TGACCGGTAA GCTGGATGAA
TGCTGCTTTG AACTGGCGCG TCAGCAAAAA GCCCAGCGTC AGTTGACCGA CAAAGTGAAA
TCAGCGTTAC GTTATCCCAT TATCATTTTA GCGATGGCAA TCATGGTGGT TGTGGCAATG
CTGCATTTTG TTCTACCGGA GTTTGCCGCT ATCTATAAGA TCTTTAACAC TCCGCTACCG
GCGCTAACGC AGGGGATCAT GACGCTGGCA AGTTTTAGTG GCGAATGGGG TTGGTTGCTG
GTGCTATTCG GCTTTCTGCT GGCGATAGCC AATAAGCTGC TGATGCGCCA CCCAACCAGG
CTTATCGCAC GGCAGAAATT GCTGTTACGC ATCCCGATTA TGGGTTCACT GATGCGGGGA
CAAAAACTCA CGCAGATCTT TACGATTCTG ACGCTGACAC AAAGTGCAGG CATTTCTTTT
TTACAGGGCG TTGAGAGCGT CAGAGAAACA ATGCGCTGCC CGTACTGGGT GCAACTTCTG
ACACAAATCC AGCACGATAT CAGTAACGGT CACCCCATCT GGCTGGCGCT AAAAAATGCC
GGTGAGTTTA GCCCGCTCTG TTTGCAATTA GTGAGAACAG GAGAGGCATC CGGCTCGCTG
GATCTCATGT TAGACAACCT CGCCCATCAT CATCGGGATA ACACAATGGC GCTGGCGGAT
AACCTCGCAG CCTTACTGGA ACCGGCGTTG CTGATCATAA CGGGAGGAAT TATCGGTACG
CTGGTGGTGG CAATGTATCT GCCAATTTTC CATTTAGGCG ATGCGATGAG TGGAATGGGA
TAA
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| Protein sequence | MASKQLWRWH GITGDGNAQD GMLWAESRAL LLIALQQQMV TPLSLKRIAI NSAQWRGDKS
AEVIHQLATL LKAGLTLSEG LALLAEQHPS KQWQALLQSL AYDLEQGIAF SNALLPWSEV
FPPLYQAMIR TGELTGKLDE CCFELARQQK AQRQLTDKVK SALRYPIIIL AMAIMVVVAM
LHFVLPEFAA IYKIFNTPLP ALTQGIMTLA SFSGEWGWLL VLFGFLLAIA NKLLMRHPTR
LIARQKLLLR IPIMGSLMRG QKLTQIFTIL TLTQSAGISF LQGVESVRET MRCPYWVQLL
TQIQHDISNG HPIWLALKNA GEFSPLCLQL VRTGEASGSL DLMLDNLAHH HRDNTMALAD
NLAALLEPAL LIITGGIIGT LVVAMYLPIF HLGDAMSGMG
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