Gene EcSMS35_A0152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_A0152 
SymboltetR 
ID6106470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010488 
Strand
Start bp119806 
End bp120483 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content63% 
IMG OID641614891 
Producttetracycline repressor protein, class A 
Protein accessionYP_001740032 
Protein GI170650887 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTATCA GTGATAAAGT GTCAAGCATG ACAAAGTTGC AGCCGAATAC AGTGATCCGT 
GCCGCCCTGG ACCTGTTGAA CGAGGTCGGC GTAGACGGTC TGACGACACG CAAACTGGCG
GAACGGTTGG GGGTTCAGCA GCCGGCGCTT TACTGGCACT TCAGGAACAA GCGGGCGCTG
CTCGACGCAC TGGCCGAAGC CATGCTGGCG GAGAATCATA CGCATTCGGT GCCGAGAGCC
GACGACGACT GGCGCTCATT TCTGATCGGG AATGCCCGCA GCTTCAGGCA GGCGCTGCTC
GCCTACCGCG ATGGCGCGCG CATCCATGCC GGCACGCGAC CGGGCGCACC GCAGATGGAA
ACGGCCGACG CGCAGCTTCG CTTCCTCTGC GAGGCGGGTT TTTCGGCCGG GGACGCCGTC
AATGCGCTGA TGACAATCAG CTACTTCACT GTTGGGGCCG TGCTTGAGGA GCAGGCCGGC
GACAGCGATG CCGGCGAGCG CGGCGGCACC GTTGAACAGG CTCCGCTCTC GCCGCTGTTG
CGGGCCGCGA TAGACGCCTT CGACGAAGCC GGTCCGGACG CAGCGTTCGA GCAGGGACTC
GCGGTGATTG TCGATGGATT GGCGAAAAGG AGGCTCGTTG TCAGGAACGT TGAAGGACCG
AGAAAGGGTG ACGATTGA
 
Protein sequence
MFISDKVSSM TKLQPNTVIR AALDLLNEVG VDGLTTRKLA ERLGVQQPAL YWHFRNKRAL 
LDALAEAMLA ENHTHSVPRA DDDWRSFLIG NARSFRQALL AYRDGARIHA GTRPGAPQME
TADAQLRFLC EAGFSAGDAV NALMTISYFT VGAVLEEQAG DSDAGERGGT VEQAPLSPLL
RAAIDAFDEA GPDAAFEQGL AVIVDGLAKR RLVVRNVEGP RKGDD