| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_1652 |
|---|
| Symbol | |
|---|
| ID | 6093102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 1676088 |
|---|
| End bp | 1677560 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642488853 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001739670 |
|---|
| Protein GI | 170289432 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.749875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAAGTTT TTTTCTACGT TGTCTCGTTC GGATTTCTTG TGTTTGCGCT TTATCTTTTC
TGTCATGTGA GAAAGAAGAT CGAGTATTAC AGACGGCTGG AAAAGAGCTT CGATACCATA
GTTGATGGAC TTTCAAAACT CGATCCGAAT TCACCCGAAG AAGAGTTCTT TCAGAAAATT
CTGAATATCG CGATGGAAGT TGTTCCGGAA GCAGTAAAAG GGAGCGTCTC CAGGATCACA
CCATCGGGGG ACTGGATCTT TGTTGCCTCG AGGGGACACA TCGTAGATTT GCTTGGAAAG
AGATTTCCAT CCAGATACTT GTTCAGAGCT GGAAGAGATC CAGTAGAAGT GAATTTTCTC
GATTATGACA GAGATCTTTT TCCAGACGAC ATGTGGAAAT TCTTTGAAAG GACTCTTCGG
GGTACAAAAA AGAGGCTTGT TGTGGGTATT TTTTCTGGAG ACGAATTCGT GGGAAACATC
GCTCTCGACA GTCCGTACTC TGGTTTTTCA GAACTTTCAA AAAAGGTCTT GAAATCACTG
GGAAACCTTG CGAGCACTTA TCTTCTCATG AGGAAAACAC TGGCAAACGA ACAGCAGCTT
CAAAAGGTCA TGAGCACTAT ATTCACTCTC TTGTTTCTCT TCAGAAAATC CATCTCCGTT
GAAGAATTCC TCAAGGAAGC CCTGCAGAAG ATCGTTGAAG CGAGCAATGT CTTCACAGGC
GGAATCGTAT TCGAAGGGAA CATTCCCGTG TTTCATACGG ATCTGGAAGA GATACCGGAA
TTCGATTTTG AAGAATCAAA AGAAGAGGAA AAAATAGAAA AATTAGTAAA AGACGGTGTT
CATTACATTG TCGTACATCT GGACTATAAA GATATGCCCT CTTACCATAT GGTCTTTCTG
TCAAACGAAG ACATAGCACC CTCTTTCTTC AGTGTTCTCA ATACGTTCGC GGAAGTAGTT
TCTCTCTATC TGAGAGAGTA CCATCTTCAT CAAAAGTACC GTGAACTCGC ACTGAAAGAT
CCTTTAACCG AAGCTTATTC AAGGCACTAC TTCAACGAGT GGATATTCTC CCACATGGCG
TGGCTCAGGC GAAATCAGAA GAAATCCGTT CTGGTGATCA TGGATGTGGA CGGTTTGAAA
ATGATAAACG ACACTTACGG CCACCTCATG GGGGACAAAG CACTCGTCGA ATTCGTCAAA
ACCCTGAAGA GAACCGTTCG AGAGTCGGAT CTTGTTTTCA GATACGGTGG TGACGAGTTC
CTTCTGGTAC TCGTCGATAG CACCAAAGAT AACGCTGCCA GTGTTTTGAA GAGAGTTGAA
GAAAACCTTA AAGATGTAGA CCTGCCCTTC AAAATAGAAT TCTCCTTTGG TTATGAAGAG
ATAGACGGTT TCATGCCGAT AGAAAGAGCG CTCGCGAGAG CGGACGATCT TCTCTACAAA
AACAAGTTCG AAAAGAGAGG TGGTTCAGAA TGA
|
|---|
| Protein sequence | MQVFFYVVSF GFLVFALYLF CHVRKKIEYY RRLEKSFDTI VDGLSKLDPN SPEEEFFQKI
LNIAMEVVPE AVKGSVSRIT PSGDWIFVAS RGHIVDLLGK RFPSRYLFRA GRDPVEVNFL
DYDRDLFPDD MWKFFERTLR GTKKRLVVGI FSGDEFVGNI ALDSPYSGFS ELSKKVLKSL
GNLASTYLLM RKTLANEQQL QKVMSTIFTL LFLFRKSISV EEFLKEALQK IVEASNVFTG
GIVFEGNIPV FHTDLEEIPE FDFEESKEEE KIEKLVKDGV HYIVVHLDYK DMPSYHMVFL
SNEDIAPSFF SVLNTFAEVV SLYLREYHLH QKYRELALKD PLTEAYSRHY FNEWIFSHMA
WLRRNQKKSV LVIMDVDGLK MINDTYGHLM GDKALVEFVK TLKRTVRESD LVFRYGGDEF
LLVLVDSTKD NAASVLKRVE ENLKDVDLPF KIEFSFGYEE IDGFMPIERA LARADDLLYK
NKFEKRGGSE
|
|---|
| |