| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TRQ2_0498 |
|---|
| Symbol | |
|---|
| ID | 6091913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga sp. RQ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010483 |
|---|
| Strand | - |
|---|
| Start bp | 494106 |
|---|
| End bp | 495446 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642487685 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001738537 |
|---|
| Protein GI | 170288299 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.446578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAAC TGGCAAAAAA GATTGAAGAA GAGATTTTGA ATCACGTGAG AGAGCCTGAG
ATACCCGATC GGGAGGTTAA CCTCCTTGAT TTTGGAGCGA GAGGGGATGA AAGAACCGAC
TGTTCTGAGA GCTTCAAAAG GGCCATAGAA GAACTTTCAA AACAGGGCGG AGGAAGACTG
ATTGTTCCCG AAGGTGTGTT TCTAACGGGA CCAATTCATT TGAAGAGCAA CATCGAACTC
CACGTGAAGG GAACCATAAA ATTCATTCCT GATCCTGAGA GATACCTTCC CGTCGTTCTC
ACCAAGTTCG AGGGAATCGA ACTGTACAAT TATTCTCCCC TGGTTTACGC CTTGGATTGT
AAAAACGTGG CTATCACCGG AAGTGGGGTT TTAGACGGTT CAGCAGACAA CGAACACTGG
TGGCCCTGGA AAGGAAAGAA AGATTTCGGA TGGAAGGAAG GACTTCCCAA CCAGCAGGAG
GATGTAAAAA AACTGAAAGA GATGGCAGAG AGAGGAACAC CAGTTGAAGA GAGAGTGTTC
GGAAAGGGAC ATTATCTGAG ACCGAGTTTT GTTCAGTTTT ACAGATGCAG GAATGTTTTG
GTAGAAGATG TGAAGATCAT CAACTCTCCT ATGTGGTGTG TACATCCTGT TCTTTCTGAA
AATGTGATCA TAAGAAACAT TGAAATTTCA AGCACGGGCC CAAACAATGA TGGTATCGAT
CCTGAATCCT GCAAGTATAT GCTCATTGAG AAATGCAGAT TCGACACAGG TGATGATTCT
GTGGTCATCA AATCGGGGAG AGACGCGGAC GGAAGGCGAA TCGGAGTGCC TTCTGAATAC
ATTCTTGTGA GGGACAACCT GGTGATCAGT CAGGCGAGTC ATGGTGGACT TGTGATTGGG
AGTGAAATGT CCGGTGGTGT GAGAAACGTC GTTGCAAGGA ACAACGTCTA CATGAATGTG
GAAAGGGCTC TCAGGTTGAA AACGAATTCC AGGCGTGGAG GATACATGGA GAACATCTTC
TTTATAGACA ACGTGGCTGT GAACGTTTCG GAAGAGGTGA TCAGAATAAA TCTCAGATAC
GATAACGAAG AGGGGGAATA TCTCCCTGTA GTCAGAAGCG TTTTTGTTAA GAACCTGAAG
GCGACAGGTG GAAAATACGC TCTACGGATT GAGGGTCTGG AGAATGATTA TGTAAAAGAT
ATCATGATAT CTGATACTAT AATGGAAGGA GCGAAGATCT CTGTTCTTCT TGAGTTCGGT
CAGTTGGGGA TGGAGAATGT TATCATGAAT GGATCAAGAT TCGAAAAGCT TTACATCGAA
GGTAAAGCTC TGCTGAAATA A
|
|---|
| Protein sequence | MEELAKKIEE EILNHVREPE IPDREVNLLD FGARGDERTD CSESFKRAIE ELSKQGGGRL
IVPEGVFLTG PIHLKSNIEL HVKGTIKFIP DPERYLPVVL TKFEGIELYN YSPLVYALDC
KNVAITGSGV LDGSADNEHW WPWKGKKDFG WKEGLPNQQE DVKKLKEMAE RGTPVEERVF
GKGHYLRPSF VQFYRCRNVL VEDVKIINSP MWCVHPVLSE NVIIRNIEIS STGPNNDGID
PESCKYMLIE KCRFDTGDDS VVIKSGRDAD GRRIGVPSEY ILVRDNLVIS QASHGGLVIG
SEMSGGVRNV VARNNVYMNV ERALRLKTNS RRGGYMENIF FIDNVAVNVS EEVIRINLRY
DNEEGEYLPV VRSVFVKNLK ATGGKYALRI EGLENDYVKD IMISDTIMEG AKISVLLEFG
QLGMENVIMN GSRFEKLYIE GKALLK
|
|---|
| |