| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3520 |
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| Symbol | |
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| ID | 6068747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | + |
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| Start bp | 3844331 |
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| End bp | 3846931 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641602937 |
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| Product | putative outer membrane usher protein |
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| Protein accession | YP_001726461 |
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| Protein GI | 170021507 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.315338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATACGT TAACTCATCA GAAAAGCCGT CTACCAAAAA CAACACTTCT GGCTGCATGT
TGTGCTTTTT TTTATAGCAG TAACGGCGCG GCAACAGAAA GCGTGGAATA TGACAGTTCC
TTTTTGATGG GTACTGGGGC ATCGAGCATC GATGTCAAAC GTTATTCACA GGGTAACCCA
ACGCCTCCTG GCGTTTATAA CGTCCGTGTG TTTATCAACC AACAATCCGT TGCCAGTTTA
GAACTTCCTT TTGTTGATAT AGGGGAAAAC AGCGCCGCGG CCTGTATAAC ACTTAAGAAT
CTGGCACAAC TGCATATTAA GCAGCCAGAA TACCCAATTA CACTGCTTGC CAGAGAAGGC
GAAGAAGGCG ATTGCCTGGA CATCAAAAAA TCGATCGAGC AAGCGGAAGT CAGCTATGAC
GGCAGTGAGC AGCATTTGGA AATCTCGGTT CCGCAGGCTT ACGTCTATAA AACATATGGC
GGTTATGTTG ACCCCTCACT TTGGGAGTCG GGTATTAATG CCGCCATGCT TTCTTACTCA
TTAAACGCCT ACCACTCCGA CTCTAAAAAT GGCAACCGGG ACAGTATATA CGGAGCCTTC
AATACCGGTC TGAATTTAGG AGCCTGGCAC CTGCGTGCGC GCGGCAACTA TAACTGGTCA
CAAGATAACG GTAACAGTTT TGACTTTCAG GATCGTTACT TACAGCGTGA CATCCCGGCA
ATACGCTCAC AAGTGATCGT GGGTGATGCC TATACCACCG GTGAAACCTT CGACTCAGTC
AATGTACGTG GTATGCGTCT TTATAGTGAT AGCCGTATGC TACCATCCGC ACTGGCCAGC
TATGCGCCAA TCATTCGTGG CGTAGCAAAT TCTAACGCCA AAGTGACAGT GACCCAGAAC
GGTTACAAAA TCTATGAGTC CACCGTTCCA CCGGGTGAAT TCGTGATTGA CGATCTCAGT
CCTTCAGGGT TTGGTAGCGA ATTGGTCATT ACTATTGAAG AAGCAGATGG TTCTAAACGC
TCATTTACCC AACCTTTCTC TTCTGTCGTG CAGTTGCAGC GCCCTGGCGT TGGCCGTTGG
GATATTAGTG CCGGACAAAT TATCGATGAC AGCTTGCGTC ATGAACCCAA TATGGCACAG
GCCTCTTTTT ACTACGGTTT CAATAATTTA TTCACCGGTT ATACCGGAGT CCAAATTACA
GATAACGACT ATATGTCTGG CCTTTTGGGG CTAGGGATCA ATACCAGTAT TGGTGCCTTT
GCGGTAGATA TTACACATGC CCGTACCGAA ATTCCTGACG ATAAAACATA TCAGGGGCAA
AGTTATCGTA TAACCTGGAA CAAATTAATC GAAGCTACAA GCACCTCATT TAACCTTGCT
GCCTATCGTT ATTCCACTGA GGATTACCTT GGTCTGCATG ATGCGTTAGC CCTCATTGAC
GACGCCAATC ATCTGTCAGT CAACGACGAC AAAGACACGA TCCGTACCTA TTCACGCATG
AAAAACCAAT TTACCGTTAG TGTAAATCAG CCGTTGAGTT TTGCTTATGA GGATTACGGT
TCACTCTTTT TATCTGGCAG CTGGACAAAC TACTGGGCTG GTAACAATAA CCGAACTGAA
TACAATGTTG GTTACAGTAA AAGTGTCTCC TGGGGGAATT TCAGCGTCAA CTTGCAACGT
AGCTGGAATG AGGACGGCAA TAAAGATGAT GCGATGTATT TGAACGTTAG CGTTCCGCTG
GAAAATATTT TCGGCGGTAA ACGTAAATCC TCAGGGTTCC GTAACCTAAG CACTCAATTC
AATACTGATT TCAACGGTTC GCATCAATTA AACGTCAGTA GTTCGGGTAA CAGCGAAGAT
AATCTCATCG GTTACAGTGT GAATACGGGT TATAACCTTG ATAAAGAATC TGAAAATGTC
GCTTCCGTTG GTGGATATCT TAGCTATGAC TCCACATGGG GAGGTTTTTC CGCTTCTGCT
TCTGCTAGCA CCGATAACAG ACAACAATAC TCTGTCTCTA CCGATGGTGG TTTTGTACTT
CACAGTGGCG GCCTGACCTT TACCAATAAC AGTTTCGGTA GCAATGACAC TTTAGTCGTC
ATTAAAGCAC CCGGAGCGAA GGGGGCACGA GTCAATAACG GTACTGATGA AATCGATCGC
TGGGGTTATG CCGTTTCCTC ATCCTTAAGT CCATACCGTG AAAACCGGGT GGGATTAAAT
ATTGAAACAT TGGAAAACGA TGTCGAACTG AAAAGTACTA GTGCCACCAC TGTACCTCGT
AGTGGTTCCA TTATTCTTGC CAGTTTTGAA ACTGACCAGG GGCGTTCTGC AGTTCTGAAT
ATCAGCACCA GTAACGGTAA ACCTATTCCT TTTGCCGCTG AAGTTTATCA GGATGAAATT
ATGATCGGCA GTATGGGTCA GGGTGGTCAG GCATTTGTAC GCGGTATTAA TGACAGCGGA
GAGTTAATTA TCCGCTGGTT CGAAGACAGT CGAACAATAA ATTGCAAATT GCATTATCAA
CTTCCTGCAC AGCCAGAAAC ACTTGGAAGT ACAAACACCT TATTATTAAA CAACCTTACC
TGTAAGTTGG TTAACCACTA A
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| Protein sequence | MYTLTHQKSR LPKTTLLAAC CAFFYSSNGA ATESVEYDSS FLMGTGASSI DVKRYSQGNP
TPPGVYNVRV FINQQSVASL ELPFVDIGEN SAAACITLKN LAQLHIKQPE YPITLLAREG
EEGDCLDIKK SIEQAEVSYD GSEQHLEISV PQAYVYKTYG GYVDPSLWES GINAAMLSYS
LNAYHSDSKN GNRDSIYGAF NTGLNLGAWH LRARGNYNWS QDNGNSFDFQ DRYLQRDIPA
IRSQVIVGDA YTTGETFDSV NVRGMRLYSD SRMLPSALAS YAPIIRGVAN SNAKVTVTQN
GYKIYESTVP PGEFVIDDLS PSGFGSELVI TIEEADGSKR SFTQPFSSVV QLQRPGVGRW
DISAGQIIDD SLRHEPNMAQ ASFYYGFNNL FTGYTGVQIT DNDYMSGLLG LGINTSIGAF
AVDITHARTE IPDDKTYQGQ SYRITWNKLI EATSTSFNLA AYRYSTEDYL GLHDALALID
DANHLSVNDD KDTIRTYSRM KNQFTVSVNQ PLSFAYEDYG SLFLSGSWTN YWAGNNNRTE
YNVGYSKSVS WGNFSVNLQR SWNEDGNKDD AMYLNVSVPL ENIFGGKRKS SGFRNLSTQF
NTDFNGSHQL NVSSSGNSED NLIGYSVNTG YNLDKESENV ASVGGYLSYD STWGGFSASA
SASTDNRQQY SVSTDGGFVL HSGGLTFTNN SFGSNDTLVV IKAPGAKGAR VNNGTDEIDR
WGYAVSSSLS PYRENRVGLN IETLENDVEL KSTSATTVPR SGSIILASFE TDQGRSAVLN
ISTSNGKPIP FAAEVYQDEI MIGSMGQGGQ AFVRGINDSG ELIIRWFEDS RTINCKLHYQ
LPAQPETLGS TNTLLLNNLT CKLVNH
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