Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1048 |
Symbol | |
ID | 6066394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1135932 |
End bp | 1137773 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 641600461 |
Product | alpha amylase catalytic region |
Protein accession | YP_001724044 |
Protein GI | 170019090 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCTA TAAAACCAGG ACCCAGAAAT TTACCTATCG ACAACCCCAC ATTGTTATCA TGGAACATTA CTGACGGGGA TCTAAATTCC AAATTAAATA CATTAGAATA TCTAAACTGT ATAACAAATA TTATTAATTC TTGTGGAGTT TACCCTCAAG GATTAAAAGA CAGAGAAATT ATATCAACTT TTCACGCAGA AAAAGTTATT AATGATCTGT TAAAAAACGA TTATAAAATT TCCCTTTCTC CAGATACAAC TTATCGAGAG TTGAATAAAG CAGCACAGCG TAGCATTACA GCGCCAGACA GGATAGGAGA AGGAAAAACA TGGGTTTATC AACGAGATAC AATGATTGAA AGAGGTGATA ACAGCGGTGT TTATCAGTAT GGTCCTGCTG AACACTTCAC CCACATTATA TCTGACAAAC CTTCCCCAAA AGATAAATAT GTTGCATATG CTATTAACAT TCCTGACTAT GAGCTGGCAG CCGATGTATA TAATATTAAC GTGACGTCAC CTTCCGGACA GCAAGAAACA TTTAAAATAT TAATCAATCC AGAACATCTA CGGCAAACAC TTGAGCGTAA ATCTCTTACT GCTGTTCAGA AATCACAATG TGAAATCATC ACCCCCAAAA AACCTGGCGA AGCGATTCTT CATGCTTTTA ATGCCACCTA CCAGCAGATC AGAGAAAATA TGTCTGAATT TGCACGTTGC CATTATGGGT ATATACAAAT CCCTCCAGTG ACAACTTTCC GTGCCGACGG ACCAGAAACT CCCGAAGAAG AAAAAGGTTA CTGGTTTCAC GCTTATCAAC CCGAAGATCT TTGTACCATC CACAATCCAA TGGGAGATTT GCAGGATTTT ATCGCATTGG TTAAAGATGC TAAAAAATTT GGTATCGATA TCATTCCTGA TTATACCTTT AACTTTATGG GAATCGGGGG TAGTGGTAAA AATGACCTGG ATTATCCCTC TGCTGATATA CGAGCGAAGA TCAGTAAAGA TATAGAAAGT GGTATCCCTG GCTATTGGCA AGGTCAGGTT TTGATTCCAT TTACTATAGA TCCAGTAACA AAAGAACGTA AACAAATCCA TCCAGAAGAT ATACATCTCA CTGCAAAAGA CTTCGAAGCA AGTAAAGATA ACATCTCTAA GGATGAATGG GAAAACCTCC ATGCATTAAA AGAAAAGCGT TTAAATGGAA TGCCTAAAAC AACACCCAAA AGTGACCAGG TTATTATGTT GCAAAATCAA TACGTTCGTG AAATGCGAAA ATATGGCGTA CGAGGTTTAC GTTATGATGC GGCAAAACAC TCAAAACATG AACAAATAGA AAGATCAATA ACCCCACCGC TTAAAAATTA TAATGAGCGG TTACACAATA CTAACTTATT TAACCCAAAA TATCATAAAA AAGCCGTTAT GAATTACATG GAATATCTGG TAACTTGTCA GTTGGATGAA CAACAAATGT CATCACTGCT TTATGAAAGA GATGATTTAA GCGCCATTGA TTTTTCATTG CTCATGAAAA CGATAAAAGC CTTTTCATTT GGTGGAGATC TCCAAACCCT TGCATCAAAA CCGGGTTCCA CAATCTCAAG TATCCCATCA GAAAGACGGA TATTGATTAA CATTAACCAC GATTTTCCTA ACAATGGTAA TCTTTTCAAT GACTTTCTAT TTAACCATCA ACAAGATGAA CAATTAGCAA TGGCATATAT AGCCGCTCTG CCGTTCAGCA GGCCTTTAGT TTACTGGGAT GGCCAAGTAT TAAAATCAAC GACTGAAATT AAAAATTATG ATGGGTCCAC GCGTGTCGGC GGTGAGGCGT AG
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Protein sequence | MFSIKPGPRN LPIDNPTLLS WNITDGDLNS KLNTLEYLNC ITNIINSCGV YPQGLKDREI ISTFHAEKVI NDLLKNDYKI SLSPDTTYRE LNKAAQRSIT APDRIGEGKT WVYQRDTMIE RGDNSGVYQY GPAEHFTHII SDKPSPKDKY VAYAINIPDY ELAADVYNIN VTSPSGQQET FKILINPEHL RQTLERKSLT AVQKSQCEII TPKKPGEAIL HAFNATYQQI RENMSEFARC HYGYIQIPPV TTFRADGPET PEEEKGYWFH AYQPEDLCTI HNPMGDLQDF IALVKDAKKF GIDIIPDYTF NFMGIGGSGK NDLDYPSADI RAKISKDIES GIPGYWQGQV LIPFTIDPVT KERKQIHPED IHLTAKDFEA SKDNISKDEW ENLHALKEKR LNGMPKTTPK SDQVIMLQNQ YVREMRKYGV RGLRYDAAKH SKHEQIERSI TPPLKNYNER LHNTNLFNPK YHKKAVMNYM EYLVTCQLDE QQMSSLLYER DDLSAIDFSL LMKTIKAFSF GGDLQTLASK PGSTISSIPS ERRILININH DFPNNGNLFN DFLFNHQQDE QLAMAYIAAL PFSRPLVYWD GQVLKSTTEI KNYDGSTRVG GEA
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