| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3918 |
|---|
| Symbol | |
|---|
| ID | 6091312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4315443 |
|---|
| End bp | 4318262 |
|---|
| Gene Length | 2820 bp |
|---|
| Protein Length | 939 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641599010 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001722636 |
|---|
| Protein GI | 170026131 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAG CATCATCACT TGTCACTCGA TTGACATTAT TACTGGGCGT CACACTAACC
GTTATTTGGT TAATATTAAT CGCAACAACA GCATTCTTTT CATATGAAAA TACACGTCAA
ATATTAATCA ATGAGTTAAC ACATATGGCA TCGATGCGGG CAGACTTAAG TAATCACCAG
TTTGAAGGAG CTGAACGTGA TGCAGCCTCG TTAATAAGCC GACGAGAAAG CCTCCAGAAC
ACCTCACCGT TGCCTGAAAT ATCGATAAAA CATTATGATA GCTGCTATAT TCCTTTTAAT
CTGGACAGCT GTAATATTAA CCAACATAAA AATGATCTGT GGATAATTCA AGCGTATGGC
ACCGCCGGAC AAACTTATTA TCTCGACAGT TTTATTATCA AACAAAAAGA GGGGATTGTG
TTATTTCCAC CCCAAAAATC ATCGAGTGAT TACCTAAATC AACGGCGCAA AGATTTACTT
TTGCTCCCCA AATTCCCTAC TCACAATAAT ATCTATTGGG GAGCCCCCAC CTATACGCCT
CAAGGTGGCT GGCATGTTTC TGTCGCGGTG TGTGATAAAG TGGGCACCTT GGCTGGCTTC
GCCTTAAAAC TGAATGATCT CATCGCCTAT AATCACCCTG TCGAGCAAAG AGACATTAAT
TTATTGTTGG ATAAGAATGG TGAATTATTA CCTATTTCCC AGCAAGCAAC ATCATCAAAT
CAACTACATG AAATTCTTAA CCAACTCAAA AACAGTAAAT TACACGATGG CTGGCAGCAA
ACTCCCGACT ATTTGGTATT ACGCACCCAA TTGAAAGGGC CGGGTTGGCA GCAATTAGTT
ATTTATCCAC GAATAGGCTT TGCCTGGGAG GCACTGAAAC CCGCCTTATA TCAACTCCCT
TTCGCTCTGG TTATTTTGCT GTTACTCACG TCAGTGCTGT CACTGCTGCT GCGATATTAT
CTGGCGATCC CTTTGTGGAA TTTCATCAAT ATCATTGGCG CTACCGGGCC ACAGGCAATG
GAACCCCGAC TTCCCATAAA CCGAATAGAT GAATTAGGGC ATATTGCCCG CGCTTACAAT
AACTTACTGG ATACGTTGAA CGAACAATAT GACACCTTAG AAATGAAAGT GAAGGAGCGT
ACTCTGGCTC TGGCAAAAGC CAAACGAGCT GCTGAGCAGG CTAACCGCCG TAAAAGCGAC
CATCTGACCA CGATAAGCCA TGAAATCCGT ACACCGCTCA ACGGGGCGTT GGGGGCGGTT
GAATTATTAC AAAATACACC ACTGGATGCT GGCCAAATGA GGTTAGCGGA AACGGCTCAC
CAATGTTCGT TGTCACTGCT CGCGATCATT AACAACCTGT TAGATTTTTC ACGTATTGAA
TCAGGGCAAA TGACACTGTC GCTGGAGAAA ACGGCCCTAC TGCCTTTACT GGATCAGGCG
ATGTTAACCA TTCATAGCCA GGCACTGAGT AAGTCATTAG CGCTGTCCAC GTTTATCAGT
GCCGATATCC CGCTGGAACT TGAGCTGGAT ACACTGCGCT TAAGACAGAT TCTGGTTAAT
TTATTAGGTA ATGCCGTTAA ATTCACACCA CAGGGCCGTA TTCAACTCAG GGTCAGGCGT
CAAAACCAAA CGCTTTGTTT TACCGTTGAG GACACCGGTT GTGGTATTGA CGTGCAACAC
CAACAAACAA TATTCCAACC TTTTATGCAG ACCAGTGACC ATGAACAAGG AACGGGTTTG
GGGCTGGCTA TCGCAGATAA TCTGGCCAAA ATGATGGGAG GGCACCTGAC AGTATTCAGT
GAACCGGGTC AAGGTAGTTG TTTTTCATTA TGCCTCCCCT TCAATGCAAT CACCCCACCC
ATGCCTTTTC ATGGCGAGCT ATTCGCACCA CAGCGCTTAC ACGCCCAATT ATCAGCCTGG
GGCATGACCT GCCAGCCAGA ATTAGCTAAT CAGCCATCAC GGTACTTTGT GGATAACGCA
TTGTGTTACT TGCCCGGCCG GTTATACGCC AACCTGAAGC AATATCTACA AGGTGCTGAG
ACTGAGGTGC TAAAGAGCCT TCCGCTGCAA CCTTGGCAAA TGCACATTCT GCTGGTTGAT
GACTCCGAAA CGAATCGCGA TATTACCGGA ATGATGTTGC AGCAACTGGG ACATCAGGTC
ACGCTGGCAG ACAGTGGCAC AACCGCATTG GCGATTGGCC GCCAACACCG TTTCGATTTA
GTGCTAATGG ATATTCGAAT GCCTGTCCTG GACGGGCTGG CCACCACAGC ACGCTGGCGT
CATGATCCGG CGAACATTGA TAGCCACTGC ATGATCACCG CCCTGAGCGC CAATGCCAGC
CCGGATGAGC AAATCAAAAC CAGTCAGGCG GGGATGAACC ACTACCTTTC CAAGCCTGTC
ACCCTCGGCC AATTGGCTGA AATGTTAGAT CTGACCGCAC AATTCCAACT TGAACGTGGG
GTCGATCTAT CGCCACAACT CTCCGAGCCT CAGCCATTAC TGGATCTCGC GGATAGCGCG
TTGTCCCTGA AACTTTATCA ATCACTGCAA GTATTAATTC AGCAGGCCAA AGACGCTATT
GAGAACTTGC CCGTATTATC CCATACGCTT CACACCATAA AAGGCTGTGC CGGGCAAGCT
GGGCTAATTG AATTACAAGA TGCGGTCATT CAATTAGAAC ACGCTCTCGA TACTCATGAA
ACGCTGACAC AGCAAGATAT CATTCAACTT GATGAAATAA TTCATGTGCT GCTACAGCCC
CCCACTACCT GCGAATCCAC GTTTATCATC AGCCAGGGCC AGTCCCTTAT GGTTAAATAA
|
|---|
| Protein sequence | MGKASSLVTR LTLLLGVTLT VIWLILIATT AFFSYENTRQ ILINELTHMA SMRADLSNHQ
FEGAERDAAS LISRRESLQN TSPLPEISIK HYDSCYIPFN LDSCNINQHK NDLWIIQAYG
TAGQTYYLDS FIIKQKEGIV LFPPQKSSSD YLNQRRKDLL LLPKFPTHNN IYWGAPTYTP
QGGWHVSVAV CDKVGTLAGF ALKLNDLIAY NHPVEQRDIN LLLDKNGELL PISQQATSSN
QLHEILNQLK NSKLHDGWQQ TPDYLVLRTQ LKGPGWQQLV IYPRIGFAWE ALKPALYQLP
FALVILLLLT SVLSLLLRYY LAIPLWNFIN IIGATGPQAM EPRLPINRID ELGHIARAYN
NLLDTLNEQY DTLEMKVKER TLALAKAKRA AEQANRRKSD HLTTISHEIR TPLNGALGAV
ELLQNTPLDA GQMRLAETAH QCSLSLLAII NNLLDFSRIE SGQMTLSLEK TALLPLLDQA
MLTIHSQALS KSLALSTFIS ADIPLELELD TLRLRQILVN LLGNAVKFTP QGRIQLRVRR
QNQTLCFTVE DTGCGIDVQH QQTIFQPFMQ TSDHEQGTGL GLAIADNLAK MMGGHLTVFS
EPGQGSCFSL CLPFNAITPP MPFHGELFAP QRLHAQLSAW GMTCQPELAN QPSRYFVDNA
LCYLPGRLYA NLKQYLQGAE TEVLKSLPLQ PWQMHILLVD DSETNRDITG MMLQQLGHQV
TLADSGTTAL AIGRQHRFDL VLMDIRMPVL DGLATTARWR HDPANIDSHC MITALSANAS
PDEQIKTSQA GMNHYLSKPV TLGQLAEMLD LTAQFQLERG VDLSPQLSEP QPLLDLADSA
LSLKLYQSLQ VLIQQAKDAI ENLPVLSHTL HTIKGCAGQA GLIELQDAVI QLEHALDTHE
TLTQQDIIQL DEIIHVLLQP PTTCESTFII SQGQSLMVK
|
|---|
| |