Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3917 |
Symbol | |
ID | 6090239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4313699 |
End bp | 4315216 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641599009 |
Product | YscC/HrcC family type III secretion outer membrane protein |
Protein accession | YP_001722635 |
Protein GI | 170026130 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCTAA TCTATATCAT GAGAAAAATA ACGGGTCTGA TATTACTTTT TTTTGCCACA TTGTTGCCTT ATGGGAAATT TTCTTATGGA AAAGCGATTC CTTGGCAAGG CGAGCCTTTT TTTATTTATA GCCGAGGCAT GACAGTTTCT GAATTATTAA AAGATTTGGG GATGAATTAC GGTATTCCTG TGGTGATCAG TTCGGAAATA AACGAGCACT TTACTGGAAA GATTAGGGAT AAGACACCTG AAAAAATCCT ATCGGAGTTG GCTGGGCGAT ATAATATAAC GTGGTATTAC GATGGTGAAA CACTCTATTT TTACCCAGTT CAATCAATCA AGCGGGAGTT TATATCCCCC GATGGTCTGG CTGCCAATAC GTTAGTTAAA TATCTCCAGC GCGGTGACGT GCTGGCGGGG AAAAACTGTG CCATAAAAGC GATCCCCCAC CTTGATACCC TTGAGGTCAA GGGAGTGCCT ATCTGCATCG AACGCGTAAA GTCAGTAAGC AAAATGCTTT CTGAGCAAGT TCGTCACCAA AACCAAAATA AAGAAACAGT GAAAGTTTTC CCGCTGAAAT ATGCTTCAGC AGCGGATTCG GATTATCAGT ACCGAGATCA AAACGTCAGA TTACCGGGGT TGGTCAGTGT GTTACGTGAG TTGAACCAAG GGAATAATTT GCCTTTGGCG GGCGGTAACC AACCAGATGG AAATCAAGCA AGCTCACCGG TGTTTTCGGC TGATCCTCGG CAAAATGCCG TCATTATTCG CGATCGCCAG GCTAATATGC CGATTTATCG CAGCTTGATT ACCCAACTGG ATCAGCGGCC AATTCAGATA GAAATTTCTG TCACTATTAT TGATGTTGAT GCGGGAGATA TCAGCCAACT GGGTGTTGAT TGGTCTGCAT CTGCTTCTAT TGGTGGAACG GGGGTCTCAT TTAATAGCAC CTTCGCCAAG AATAATGCTG AAGGCTTTTC TACCGTGATT GGTGATACGG GGAACTTTAT GGTTCGTCTG AATGCGTTAC AAAAAAATTC ACGAGCCAGA ATTTTATCTC AACCTTCAGT GGTGACCCTG AACAATATTC AGGCGGTACT GGATAAAAAC GTGACGTTTT ATACCAAGCT GCAAGGTGAG AAAGTGGCCA AACTTGAATC TGTCACTTCA GGGTCATTAC TGCGAGTGAC GCCAAGAATG ATCGAGACCG AAGGGGTACA AGAGGTTTTA CTGAATCTCA ATATTCAGGA TGGTCAGCAG CAAGCTTCTA CCAATAGTAA TGAGCCATTA CCCGAAATAC GAAACTCAGA TATTTCGACG CAGGCCACGC TACAGGTTGG ACAAAGTTTA CTCTTGGGCG GATTTATTCA GGACACGCAG ATTGAGTCAC AAAATAAAAT TCCTTTACTG GGCGATATTC CGCTATTAGG TGGGTTGTTC CGTAGTACAG ATAAACAATC TCACAGCGTG GTCAGACTCT TCCTGATCAA GGCCGTTCCG GTTAATGCAG GGGAATAA
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Protein sequence | MSLIYIMRKI TGLILLFFAT LLPYGKFSYG KAIPWQGEPF FIYSRGMTVS ELLKDLGMNY GIPVVISSEI NEHFTGKIRD KTPEKILSEL AGRYNITWYY DGETLYFYPV QSIKREFISP DGLAANTLVK YLQRGDVLAG KNCAIKAIPH LDTLEVKGVP ICIERVKSVS KMLSEQVRHQ NQNKETVKVF PLKYASAADS DYQYRDQNVR LPGLVSVLRE LNQGNNLPLA GGNQPDGNQA SSPVFSADPR QNAVIIRDRQ ANMPIYRSLI TQLDQRPIQI EISVTIIDVD AGDISQLGVD WSASASIGGT GVSFNSTFAK NNAEGFSTVI GDTGNFMVRL NALQKNSRAR ILSQPSVVTL NNIQAVLDKN VTFYTKLQGE KVAKLESVTS GSLLRVTPRM IETEGVQEVL LNLNIQDGQQ QASTNSNEPL PEIRNSDIST QATLQVGQSL LLGGFIQDTQ IESQNKIPLL GDIPLLGGLF RSTDKQSHSV VRLFLIKAVP VNAGE
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