Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3907 |
Symbol | |
ID | 6090680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4306409 |
End bp | 4308457 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598999 |
Product | secretion system apparatus protein SsaV |
Protein accession | YP_001722625 |
Protein GI | 170026120 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGT CAGCACTGGT GCGGGGTTTG ACGATGATCA CCGCGCGGCA GGATATTTTT TTAGCGGTCA TGTTGCTGGT GGCGGTCTTT ATGATGATCC TGCCACTGCC TACGACGATG GTGGATTTAC TGATCGCCAT CAATCTTGCC TTCTCCGTCA TTCTCTTAAT GATCTCGATC TATCTGCGCG ATCCTTTGGA GTTCTCCGTC TTCCCGTCAT TACTGTTGAT CACCACCCTT TATCGATTGG CACTAACGAT CAGCACCACG CGACTGGTGC TGTTGCAACA TGATGCCGGT GAGATTGTCG AGGCATTCGG TCAGTTTGTC GTGGGCGGTA ATCTGGCCGT CGGGATGATC ATTTTTACCA TTATCACGGT GGTCCAATTT ATCGTGATTA CCAAAGGTTC AGAGCGGGTT GCTGAGGTCA GTGCGCGCTT CTCACTTGAT GGTATGCCGG GTAAGCAGAT GAGCATCGAC GGTGACATGC GTGCGGGTGC GATCGATTCG GTCGAAGCTA AACGGCTACG GGAGCGGGTA CAAAAAGAGA GCCGCTTATT TGGTGCTATG GACGGTGCCA TGAAGTTTGT TAAAGGGGAT GCCATCGCTG GGATCATTGT CATTCTGGTC AATATCATTG GCGGTATCAC TATTGGTGTG ATGCAACACA AGATGTCCGC GGAAGAGGCG ATGAATACCT ACGCGGTATT ATCGATAGGC GATGGATTGT GCGCCCAAAT CCCTTCATTA CTGATCTCGA TTACCGCCGG GATTATTGTT ACCCGGGTTC CTGGCAGCAA CAAACAGAGT CTGGCGAATG AGTTGGCGGT GCAGGTGGGG CGTCAACCGG ATGCGCTGTG GTTAGCTGCC GCTATTCTGA CGGTGTTCGC CCTGTTACCC GGCTTCCCGT TCCTGATCTT TATCACTTTG GCGGCCGCGG TTGCGGCTCC GGCTTTTTTA CTTTATCGGA AGAACCGGCG GATATCGCAG GATGGTCGCG CAAATGGAGG CGGTGAAGAG GGGGCGGCCA CGGGGCAGCG TATGACGCCT GGTGCCGTAC CGCTGATGCT GCACTGTGCA TCAAATTTAC ATCACCCGCA TTTAGGGCGC GATATTGATG GCCTACGCTG GCGCTGGTTT GAGCATCTCG GTGTGCCATT GCCTGAGGTG GAGATCCGCT GTGATCCTAC ATTGGCAGAA AATACCTTAT CGGTGCAGGT GTATCAGGAG CGGGTGCTGG AGGTTGTGTT ACCGCCCGAC AGCTTGTTAC TGACACGGCC TTGCTCATCG TTAGTAACGA ACAATCAGGT ATTGGGCGCG AAGATGGGGT CATTTGATTG GCTGGATGCT AAACAGGCTA TGCAAGCCAG AACCTTGGGT ATCCCTTACG TGGAGGGGCA TCAGCGGATC ATCACCTGTC TGACCAGGGT GTTTGAACGG TACACCGCCG AATTTATCGG CGTACAGGAG ACTCGCTACC TGATGGATGC CATGGAAGGG CGCTATGGTG AGTTAGTGAA AGAGCTACAA CGGCAGATAC CCGTCGGTAA AGTGGCTGAA ATATTACAAC GGCTGGTTGA GGAAAATATT TCCATTCGCG ATTTACGGAC TATTTTCGGC GCGTTGGTGG TTTGGGCACC GAAAGAAAAA GATATCGTGA TGCTCACCGA ATATGTCCGT ATCGCCTTGC GCCGTCATTT GTGCCGTCGC TTTAGTCACA ATAAAACCTG GATATCAGTA TTACGCCTCG GTGATGGGGT GGAGCATCTG ATCCGCGACT CTATCCGCCA GACATCATCA GGCACTTACT CCGCACTGGA GGAGAGGCGA TCCCTCTTGA TCCTCAACAA AATAAAAAAC GCATTTGCTG AAAACCAGGA TGCGGTATTG CTTACCACCC TCGATGTTCG TCGCTTTGTC CGCAAAATTA TTGAGCGGGA TCTCTTCGTG CTACCGGTAC TTTCCTGGCA GGAACTGGGC GATGAAATGA ATCTCAAGGT GGCGGGCACC ATTGAACTGA TTGGCGATGA ACTTGATGAA ACTGCCTGA
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Protein sequence | MSKSALVRGL TMITARQDIF LAVMLLVAVF MMILPLPTTM VDLLIAINLA FSVILLMISI YLRDPLEFSV FPSLLLITTL YRLALTISTT RLVLLQHDAG EIVEAFGQFV VGGNLAVGMI IFTIITVVQF IVITKGSERV AEVSARFSLD GMPGKQMSID GDMRAGAIDS VEAKRLRERV QKESRLFGAM DGAMKFVKGD AIAGIIVILV NIIGGITIGV MQHKMSAEEA MNTYAVLSIG DGLCAQIPSL LISITAGIIV TRVPGSNKQS LANELAVQVG RQPDALWLAA AILTVFALLP GFPFLIFITL AAAVAAPAFL LYRKNRRISQ DGRANGGGEE GAATGQRMTP GAVPLMLHCA SNLHHPHLGR DIDGLRWRWF EHLGVPLPEV EIRCDPTLAE NTLSVQVYQE RVLEVVLPPD SLLLTRPCSS LVTNNQVLGA KMGSFDWLDA KQAMQARTLG IPYVEGHQRI ITCLTRVFER YTAEFIGVQE TRYLMDAMEG RYGELVKELQ RQIPVGKVAE ILQRLVEENI SIRDLRTIFG ALVVWAPKEK DIVMLTEYVR IALRRHLCRR FSHNKTWISV LRLGDGVEHL IRDSIRQTSS GTYSALEERR SLLILNKIKN AFAENQDAVL LTTLDVRRFV RKIIERDLFV LPVLSWQELG DEMNLKVAGT IELIGDELDE TA
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