| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3186 |
|---|
| Symbol | |
|---|
| ID | 6090436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3483769 |
|---|
| End bp | 3485076 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 641598263 |
|---|
| Product | LPS side chain defect: putative O-antigen transferase |
|---|
| Protein accession | YP_001721908 |
|---|
| Protein GI | 170025403 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.15241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTC CAACTCATCT TTTAACAGCA TTCTCATCGT GGGGTTCAAG AGCTGTATCT
TCATTGACCC AAATATTAAG CATTGGGTAT TTGATTGATA TTCTTGGAGA ACAAAATTAT
GCCATGTTTG TGTTGTTATC AGGTCTTATT GCTTGGGGAA CAATTGCAGA TTTTGGACTT
GGTTATAGTC TTCAGAATTT CATATCAGAA CAGCGTTCTG TCAATGCAAA CTATAGCGAA
TATATTGTTG CGTCTGTTAG TTTAATGTCG ATTGGTTTTA TTTTGTTGAC TTTTTTATTA
TGGCCGCTAT CTAATCTGAT TGTGCCATTT TATCTTCAAG GGTTTGATTC GGAGAAAGTA
CCAGATAAAG CAATATTACT TTATACGTCA TTATTTATTT TTTCTATAAC CTACTTTGGT
GCAGTGATAT ATAGAGTATG GTTTGCAGAG AATAAGGGTA TACTTGTTAA TATTATATCA
GCCTCGATCT CTTTGATTGG ATTTTTGTCC CTAATTATAA TTAGTAATGC TAACCTTGGT
TACAGTTTCT ATTTGATAAT TTTTTCATTT TTAGGGCCAG CGGCTATAAT TCCATTTGTT
TTATTATTTG GGCGATTTTT TAAAGAGATA AAAAAGTGTC ATAGAATTAG ATCTGATATT
ATTAAGCCTA TTGTCCGTCG TGCCTCTGGT TTTCTAATTT TTTCTATTTT AACTACAATT
ATTATTCAGA CTGATTACAT AGTAATGTCC CAAGTTTTAA AACCTAGTGA GATAATAACA
TATAGCGTTT TAATGAAGAT TTTTGGTATT GTATTCTTTG TCTTCTCTGC GTTGCTTCAG
GCACTATGGC CTGTCTGTGT CGAGTATAGA GTCCAAGGTA AGTGGGTTCA GCTAAATAAT
CTTATAAAAT TATATATTTT ATTAGGTGTT ATTTTCGTGA TAGCTTGTAG TATTGGGTTT
TATATATTTC GGATGGAAAT TATCGGGATG ATTTCTCATA ATTTAGATCC CAATATTAAA
TGGACTATAA TAGCTCTTTT TTGTGTGTAT TATATATTAC GAATTTGGTC TGAAACGTTT
TCAATGCTTT TACAAAGTAT GAATTTTTTA CGACCGCTTT GGTATCTCTT ACCAATACAA
GCACTCTTAA ATTTATTCTT ACAATGGAAT CTATCAAAGG AATATGGAAT GCAAGGAATG
TTAATTGGTG TTATTACATC ATTTGCATTA ACTACTGTGA TATTCCTACC TCTGATTTAT
AGTAATAGAA TCGGTAAAAT GAAAGTACTT AATAATCCTA GTTATTAG
|
|---|
| Protein sequence | MRIPTHLLTA FSSWGSRAVS SLTQILSIGY LIDILGEQNY AMFVLLSGLI AWGTIADFGL
GYSLQNFISE QRSVNANYSE YIVASVSLMS IGFILLTFLL WPLSNLIVPF YLQGFDSEKV
PDKAILLYTS LFIFSITYFG AVIYRVWFAE NKGILVNIIS ASISLIGFLS LIIISNANLG
YSFYLIIFSF LGPAAIIPFV LLFGRFFKEI KKCHRIRSDI IKPIVRRASG FLIFSILTTI
IIQTDYIVMS QVLKPSEIIT YSVLMKIFGI VFFVFSALLQ ALWPVCVEYR VQGKWVQLNN
LIKLYILLGV IFVIACSIGF YIFRMEIIGM ISHNLDPNIK WTIIALFCVY YILRIWSETF
SMLLQSMNFL RPLWYLLPIQ ALLNLFLQWN LSKEYGMQGM LIGVITSFAL TTVIFLPLIY
SNRIGKMKVL NNPSY
|
|---|
| |