Gene YPK_3098 details

Gene Information

• Locus tag: YPK_3098
• ID: 6090162
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 3400651
• End bp: 3401361
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641598176
• Product: NLP/P60 protein
• Protein accession: YP_001721822
• Protein GI: 170025317
• COG category: [R] General function prediction only
• COG ID: [COG1310] Predicted metal-dependent protease of the PAD1/JAB1 superfamily

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.19861
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAGATA AAACGCTTAA AGCGATATTG GCCCATGCCG AGGCTGAATA CCCCAAAGAG 
TGCTGTGGTG TTGTTGCGCA GAAGTCGCGA GTGGAAAAAT ATTTCCCGTG CAATAACTTG 
GCTACAAACC CGACTGAACA GTTTCATCTC GATCCCGCTG GCTATGTGGA GGCAGAAGAT 
TGGGGAATCA TTACGGCGAT TGTTCACAGT CATCCTGATG CAACAACGCA GCCGTCCGAA 
TTGGACATGG CCCAATGCGA TAATAACGAA CTACCCTGGC ACATTGTTAG CTGGCCAGAA 
GGGGATTTAC GGACTATCCA GCCGCGCGGT GACCTCCCGC TCCTTGGCCG ACAGTTCGTA 
TTGGGGCATA CCGATTGCTG GGGCTTGATA ATGTCTTACT TCAAGCAAAC GCATGGCATT 
GAGTTGAAAG ACTATCGCGT TGATCGGCAT TGGTGGGAGT CCGGCACGGA AAACTTCTAT 
ATGGATAACT GGTATGAATG TGGTTTCCGT GAGTTCAGTG GCCCAGCGCA ACCAGGCGAC 
CTGATAATCA TGCAAGTATC CGCGCCAGTG GCTAACCATG GGGGGATTCT GCTGGAAGAT 
GGCATGCTGC TTCACCACCC ATATGGGCAA CTTAGCCAGC GAGTGCCTTA CGGTGGTTAT 
TGGCAGGAAA GGACTATGAA GGTGGTGAGG TATGAAATTT CACAATTATA A 

 

Protein sequence

MRDKTLKAIL AHAEAEYPKE CCGVVAQKSR VEKYFPCNNL ATNPTEQFHL DPAGYVEAED 
WGIITAIVHS HPDATTQPSE LDMAQCDNNE LPWHIVSWPE GDLRTIQPRG DLPLLGRQFV 
LGHTDCWGLI MSYFKQTHGI ELKDYRVDRH WWESGTENFY MDNWYECGFR EFSGPAQPGD 
LIIMQVSAPV ANHGGILLED GMLLHHPYGQ LSQRVPYGGY WQERTMKVVR YEISQL