| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2508 |
|---|
| Symbol | |
|---|
| ID | 6087788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2743107 |
|---|
| End bp | 2744384 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641597576 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001721238 |
|---|
| Protein GI | 170024733 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAA TCACTGCATT ACGCACTGAG GATGTACGTT TTCCCACCTC GTTGGAATTG
GATGGTTCGG ATGCAATGAA TCCCGATCCA GACTATTCAG CAGCCTATGT GATTTTAGAC
ACCGATAATC CGGCACTCAG TGGCCACGGT CTGACGTTCA CCATCGGACG TGGTAATGAA
ATTTGCTGCG TGGCCATCCA TGCATTGGAA CATCTGATCG TTGGCCGTGA TTTAGCGTCA
ATGACTGCCA ATATGGGTAA GTTTTGGCGT GAATTTACCA GCGACAGCCA GCTACGTTGG
ATCGGTCCGG AGAAAGGCGC GATTCATCTG GCCACTGGCG CGGTAATCAA TGCCGTATGG
GATTTATGGA GTAAGGCGGA GGGCAAGCCG CTGTGGCGTT TAGTGGCCGA TATGTCCCCT
GAAGAGTTGG TGCGCTGTAT TGATTTTCGC TACATCACCG ACTGTATTAC CCCGGAGGAG
GCATTAACGC TGTTGCAGCA GCGAGCGCAT AACAAAGCCC TACGGCTGGA AAAATTGCAA
GACGAAGGCT ACCCTTGCTA TACCACGTCA GCGGGCTGGT TGGGGTATCC CGATGATAAG
TTACGGCGCT TATGTCAGGA CGCGGTGGAT GCCGGTTTTG ACTATTTGAA ACTCAAAGTG
GGGCGTGATC TCGAAGACGA TATTCGCCGG GTGCGCATTA CCCGTGAGGT GCTTGGTCCT
GATCGTAAAC TGATGATTGA CGCCAATCAG ATCTGGGAAA CTAACGAGGC TATTCCGTGG
GTGAATCAGC TCGCGTTTGC CAATCCGTGG TTTATTGAGG AACCCACTAA CCCGGATGAT
ATCGAAGGCC ATCGTCGTAT TCGTCAAGGT GTTGCTCCGG TCAAAGTGGC AACGGGCGAA
ATGTGCCAGA ACCGCATTAT GTTCAAACAA TTCATCATGC GCGAAGCCAT TGACGTGGTG
CAAATAGATG CCTGCCGGTT AGGCGGGGTC AACGAAGTGT TGGCGGTAAT GCTGATGGCG
GCAAAATACG ATCTGCCAGT GTGTCCACAT GCCGGTGGTG TCGGGTTATG TGAGTATGTG
CAACACCTGG CGATGATTGA CTACCTGTGT ATTGCCGGAA CGGATAAAGG GCGAGTGATA
GAGTATGTCG ATCACTTACA TGAGCATTTT GTTCACCCGT GTGTGATTAA AAACGCGGCC
TATATGCCAC CCGAGCAACC GGGTTTCTCC ATCGAAATGC ATCAATCGTC GATAGAGAAG
TACCGTTTTC GCGTTTAA
|
|---|
| Protein sequence | MTIITALRTE DVRFPTSLEL DGSDAMNPDP DYSAAYVILD TDNPALSGHG LTFTIGRGNE
ICCVAIHALE HLIVGRDLAS MTANMGKFWR EFTSDSQLRW IGPEKGAIHL ATGAVINAVW
DLWSKAEGKP LWRLVADMSP EELVRCIDFR YITDCITPEE ALTLLQQRAH NKALRLEKLQ
DEGYPCYTTS AGWLGYPDDK LRRLCQDAVD AGFDYLKLKV GRDLEDDIRR VRITREVLGP
DRKLMIDANQ IWETNEAIPW VNQLAFANPW FIEEPTNPDD IEGHRRIRQG VAPVKVATGE
MCQNRIMFKQ FIMREAIDVV QIDACRLGGV NEVLAVMLMA AKYDLPVCPH AGGVGLCEYV
QHLAMIDYLC IAGTDKGRVI EYVDHLHEHF VHPCVIKNAA YMPPEQPGFS IEMHQSSIEK
YRFRV
|
|---|
| |