Gene YPK_2016 details

Gene Information

• Locus tag: YPK_2016
• ID: 6088554
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 2244902
• End bp: 2246836
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641597083
• Product: exoribonuclease II
• Protein accession: YP_001720756
• Protein GI: 170024251
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.134803
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAAG ATAACCCGCT GCTGGCGCAG CTAAAACAGC AACTTCACAC TCAGACCCCA 
CGCGTTGAAG GCGTCGTTAA AGGTACTGAG AAAGGCTTTG GCTTTCTTGA GGTAGATGGG 
CAGAAAAGTT ACTTTATTCC GCCTCCGCAG ATGAAGAAGG TCATGCACGG CGATCGCATT 
ATTGCCACCC TGCATACGGA TAAGGATCGT GAAATTGCTG AACCTGAAAC ATTGGTTGAG 
CCATTTTTAT CCCGCTTTGT TGGCCGGGTG CAACGAAAAG ATGATCGTCT GTCTATCGTG 
CCCGACCACC CTTTATTACG TGATGCTATT CAATGCCGCC CAGTACGTGA ACTGACGCAT 
AGCTTCCAAA ACGGTGATTG GGCAGTGGCT GAGATGTGCC GCCACCCATT AAAAGGCGAC 
CGCGCCTTTC AGGCTGACCT AACCGCGTTT ATTACCAATG GTGAAGACCA CTTCGTTCCT 
TGGTGGGTAA CACTGGCTCG CCATAACCTT GAGCGTGAAG CCCCTGCTAT GGTCGAATCG 
GCCTTAAATG ACGCCGAGCT TGAGCGAGAA GACTTAACCG CACTTAATTT TGTCACTATC 
GACAGCGCCA GCACTGAAGA CATGGATGAT GCGCTGTTTG TCCAAGACAA TGGCGACGGT 
TCATGGTTAT TGACCATTGC CATTGCAGAC CCAACAGCTT ACGTCGTCGA AAACAGTGAA 
TTGGATTTAA CCGCCCGTAA GCGTGCTTTT ACCAATTATC TGCCGGGTTT TAACATCCCG 
ATGCTTCCGC GTGATTTGTC CGACAACCTC TGTTCACTGC GCCCAAATGA ACGTCGCCCA 
GTATTGGTTT GCCGTGTGAC GATCACAGAA GAAGGGACGC TAAGTAACGA TATTCGTTTC 
TCCGCTGCTT GGGTTGAATC AAAAGCCAAA CTGGTTTACG ACGATGTCTC TGACTGGTTG 
GAAGGAAATA ATCGCTGGCA GCCACAAGAT ACCGCTATTG CAGAGCAGAT TACGTTACTG 
AAACGTATCT GTGACGCCCG TAGCAACTGG CGTCAACAAC ATGCGCTGGT CTTTAAAGAC 
CGCCCAGACT ATCGCTTCCT GTTGGGTGAA AAAGGCGAAG TGCTGGATAT CATTGTTGAG 
CATCGTCGTA TCGCCAACCG CATTGTAGAA GAGTGTATGA TTGCGGCGAA CGTCTGTGCG 
GCATTGGCGT TACGGGAACA CCTCGGTTTT GGTATTTATA ACGTGCATAC CGGTTTTGAC 
CCGGCATTAG TCGAACAAGC GGCTAGCGTA TTGAAAGCCA ATGGTGTTGG TGCCGATCCT 
CAAGCCCTGC TGACGTTACC CGGTTTCTGT GAGTTACGCC GTCACCTTGA TGCCCTGCCA 
ACACAGTTCC TCGACAGCCG TATTCGCCGT TTCCAGACAT TTGCTGAAAT TAGTACTGTC 
CCCGGTCCGC ATTTTGGCTT GGGGCTTGAA GCCTATGCCA CCTGGACATC TCCAATCCGT 
AAATACGGCG ACATGGTCAA TCATCGCCTG CTGAAAGCGA TTATTACTGG TCAACAAGCA 
GAAAAACCAC AAGAAGAGAT CACGGTCCAA TTGGCTGAAC GTCGCCGCCT GAATCGCATG 
GCTGAACGTG ATGTCGGTGA TTGGTTGTAT GCCCGTTATC TGCAACCACA AGCAGGAACT 
GACACTCGTT TCACGGCAGA GATTATTGAT ATCACCCGCG GTGGCTTGCG TGTGCGTTTA 
CTGGATAACG GTGCCGTTGC CTTTATTCCT GCGCCGTTTA TTCACGCGGT GCGTGATGAA 
GTGGTCTGCA GCCAGGAAAC CGGTACTGTG CAGATCAAAG GCGAAACAGT TTATAGCCAA 
AGTGACAAAA TCGAGGTACG TATTGCGGAA GTTCGCATGG AAACCCGTAA TGTCATTGCT 
CGCCCAGTAG CTTAA 

 

Protein sequence

MFQDNPLLAQ LKQQLHTQTP RVEGVVKGTE KGFGFLEVDG QKSYFIPPPQ MKKVMHGDRI 
IATLHTDKDR EIAEPETLVE PFLSRFVGRV QRKDDRLSIV PDHPLLRDAI QCRPVRELTH 
SFQNGDWAVA EMCRHPLKGD RAFQADLTAF ITNGEDHFVP WWVTLARHNL EREAPAMVES 
ALNDAELERE DLTALNFVTI DSASTEDMDD ALFVQDNGDG SWLLTIAIAD PTAYVVENSE 
LDLTARKRAF TNYLPGFNIP MLPRDLSDNL CSLRPNERRP VLVCRVTITE EGTLSNDIRF 
SAAWVESKAK LVYDDVSDWL EGNNRWQPQD TAIAEQITLL KRICDARSNW RQQHALVFKD 
RPDYRFLLGE KGEVLDIIVE HRRIANRIVE ECMIAANVCA ALALREHLGF GIYNVHTGFD 
PALVEQAASV LKANGVGADP QALLTLPGFC ELRRHLDALP TQFLDSRIRR FQTFAEISTV 
PGPHFGLGLE AYATWTSPIR KYGDMVNHRL LKAIITGQQA EKPQEEITVQ LAERRRLNRM 
AERDVGDWLY ARYLQPQAGT DTRFTAEIID ITRGGLRVRL LDNGAVAFIP APFIHAVRDE 
VVCSQETGTV QIKGETVYSQ SDKIEVRIAE VRMETRNVIA RPVA