| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1481 |
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| Symbol | |
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| ID | 6091117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1639755 |
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| End bp | 1640324 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641596550 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001720227 |
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| Protein GI | 170023722 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.82098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGCCTCC GTATTTATAT GGGGTCTTCC TACACTCGAT GTTTGGCATT GAGTGACATT
TATAAAAGTG CTAGAGAGGA TATTATGGCG CAAGATATGT TTATCAAAAT TGATGGTATT
GAAGGTGAGT CTTTGGATGC CAATCACAAA AACGAAATCC AGGTATTAGC TTGGAACTGG
GATGTTGCTC AACACTCGAA TATGCACAGC GGTTCAGGTG GCGGTTCAGG TAAAGCCTCT
GTTTCAGATT TTTGCTTCGC ACATTATATC GATAAAGCTA GCCCGAACTT ATTGAGCTAT
TGCTTGCTGG GTAAGCACAT TAAAAATGTT CAGTTCGTAC TGCGTAAAGC CGGTGGCGAT
CCGCTGGAAT ATCTGACAAT TAAATTTACC GATGTCATCA TTACTCGTGT TGATATGGCG
GGTTCTTTGG AAGATGAAAC GCGTCCACGT GAAGAAATTC GTTTCTCATT CACTAAGATG
ACTCAGGACT ATGTTATGCA GAATGCTGAA GGCCATAAAT CTGGCGTTAT TTCTGCTAAC
TACGATGTTA AAGCTAACAT GCACAGCTAA
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| Protein sequence | MCLRIYMGSS YTRCLALSDI YKSAREDIMA QDMFIKIDGI EGESLDANHK NEIQVLAWNW
DVAQHSNMHS GSGGGSGKAS VSDFCFAHYI DKASPNLLSY CLLGKHIKNV QFVLRKAGGD
PLEYLTIKFT DVIITRVDMA GSLEDETRPR EEIRFSFTKM TQDYVMQNAE GHKSGVISAN
YDVKANMHS
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