| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1478 |
|---|
| Symbol | |
|---|
| ID | 6088816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1636742 |
|---|
| End bp | 1637350 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641596547 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001720224 |
|---|
| Protein GI | 170023719 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.104156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCGT CGCTAAAAAA TAAGGTTGCA CAAAAACCTA TCGCGTTACT TCTTTTACTG
ACTGCGGTTT TTATTGCTCA GTCACAACCC GCACAGGCCG CCAGTTCGTG TGCGGGAACG
GCGGATTGTC ATATTCAGGT TTCATTTGGC GGTGAGTATG TAGAGGATAC CTGTGAAGTC
AGTATTAATG GCGCTTCATC TGCCGAGTCA GTGTCTTTAC CGACGCTGTC GACAAGCAAA
TTAAATATTG ATGGTGCAGA AGCAGGTAAC CAAGCGTTTC AAATTGCATT GAAGCTATGT
CCAGCCAATA GGTCTGTTGA TTTACGGTTT ACTGCGGCGG ACTCGTCCAG AAATCCAGAT
GTGGTGACAG GCAATTTACA AAATGAGTTG GGTGATGATT ACAGCTTAAG TGTACAAGTA
AGATTAAGTA AAGCTACAGG GCAACAAATG TTCGTTGGTA GAGAAGATAG TGTTCAGGAA
TATATCATTC CTGCTACAGG TGAAGACATC ACCCATTATT TTCTAGCGGG TTATTATGCA
AAAGGAACTA ATGCGGTAAC CCCTGGGCAG GTCAAAGCGA CTGCTGGTAT TGAATTGGTT
TACAAATAA
|
|---|
| Protein sequence | MSSSLKNKVA QKPIALLLLL TAVFIAQSQP AQAASSCAGT ADCHIQVSFG GEYVEDTCEV
SINGASSAES VSLPTLSTSK LNIDGAEAGN QAFQIALKLC PANRSVDLRF TAADSSRNPD
VVTGNLQNEL GDDYSLSVQV RLSKATGQQM FVGREDSVQE YIIPATGEDI THYFLAGYYA
KGTNAVTPGQ VKATAGIELV YK
|
|---|
| |