Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1396 |
Symbol | |
ID | 6091306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 1538953 |
End bp | 1541232 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641596460 |
Product | outer membrane autotransporter |
Protein accession | YP_001720143 |
Protein GI | 170023638 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAACACCA ATAGTAAAAA AACCTACCTT AGCATTGCTA TTTCATCCAT TCTTTACGCC TCAACAGCAA TGAACGCAAA CGCCGATTCA TGTACTGATT ATACTGTCAC TGATATTTGT GAGCAGAGTA AATATGGTGC GGGTGAATTT CATAATATTA AGCTGGGTGA TGGTGTCACT GCTGGTAGCG AAGATCACCA TTTTGTCTTT AATGGTGAAG GATATGAATT ATACAATTCT AACGCGAATT TCTCTGCTCA AATTGCCTCA GGTACCATTC GCTATACCGA AGTGAACAAC AGTCACTTTA CTGTAAACGC TCACCATTTT CCGGATGATA CCATCTATGC CGGCCGTGCA GAAAATACCA CATTGAATGA TAGCCTGATG TGGGTGGCAA CATCGGCTGA TCAGACACTG GCTAAAGGTA ATTCAATGGT CGTTGTTTCC ACCCAAATGG CCATGGTTGA TCAAATTTTT GTTACGACGT TGAATGATGG TAGCCTTCCA TTTGATCCCG TCATTACCAA TAGCCGCTAT GAAGATACGT CATATGAAAT GTTATGGGGT ATGAAAAACG AGGCAAAAGG GTGGGATACC AAAGCCACAT CGCATGACTC CGTATTTGTT GATGCCAGCA AACAGTCTAT CGAAGCCAAT GGTCACAGTA TTGGTGCCAC ATTTTATGGT AGGGCCACTC AGGTGGTCAA AGCTGGCGGT GAGTCACAGG ATACCCACTT ATTTGATCAC AGTTATTCCT GGGTATATGC CGAGGCTAAA TTAACCGGTC TGACGGAGGT TAATGACGCT GCCACTGTCT ATCTGAATGC CGCAGCAACT CAAGGTGCTT ACGCTGAGAA TGTCGTTCTC AACGGCGAAG ATACAACATT GATGGTGCGC GCGAGTCTGG ATAACAATGC CTATGCCACG GTGGATAACC TAATATTGAA TGGCGGTGAA GTGGTTTTCC AGCAGAGCTC TGGCGACCAA TATGCTTCAT TAAACATCGG CACACTTTCC GGCTCGGGCT CCTTCCTATT CAATACCTCT ATTGCTGAGG GGAAAGGAAA CTTCGTGACT ATCGCCAATG CCAGTGGGGA ACATAAGGTG ATAGTTAACG ACTCTGGCCA TGAGATCACC TCACCTGATA TGACCACATT GGACTTGATT CACGATCTCA GTGGTGATGC AACATTCACA CTGGCCTCTA TTTCTGGAGC TAACATCATT GAAGTCGATG GCGGCACTTA CGTATATAGC TTGAATACCT GGGATAATTC CGCACGAGCT GGCGGAAATC TGTGGTATTT AGGCTCAGGT TTGAATACAG GCACTGAGCT TGAACCCGAA CCTGAAGAGA AAACAACCCC GTCAACGGAT GCGGTGTTGA GTATGGCCTC ATCCAACCAG TTTATTTTCG ATGGTGAAAT GCAAAATCTG CGTTTTCGTA AAGGGGATTT AAATAATAAT AAAGGTGATG GCGCCAGTGT TTGGGGGCGT TATTTAACCA ACAATACTCG GGTCAATGCT GCTCATGATG CCGCTTACCG TTTGCAGCAA GATGGCTTTG AAATTGGTGC TGATAAAGTG CTGGAAATGT CTTCAGGCCA ATTAGTCTTG GGCGGTTTTA CCTCTTATAG CAATAACCGA GTGAAACATG CTCGTGGTGG GAACAGTACG GTTGATAGTT ATAGCTTGGG TGCCTACGGC ACTTATTTCG ATAACAGTGG TTATTATGTC GATGCCGTCG TTAAAGCCAA CCGTTTTAAA AACTCACTGA ATGCCCATAT GACCAACGGC GGTTCGGTAC AAAGTGATTA TAACCAGAAT GCAATCGGTG GCTCACTGGA AGCCGGTTAT CACTACAGCC TGTCTAATAA TTGGTTCGTA GAGCCTTATG TTCGCACCAG CTATTACACG GCACAGGATA AAGATATTGC GCTGAATAAT GGCATGACAG CGAATATTGA TAATAACCGC TCAGCTAAAG GTGAAATAGG TACACATCTG GGAACGAAGA TTGACCTGAA TAATGGGGCT ATCATCCGCC CTTATGCCAA AGTCGCTATT GAACGAGAGT TCATCAAATC AAATACCGTG ACGATCAATC AGGTTAACGA CTTTAATAAT GATTTATCAG GACATACCGC GAAGTATGGT TTAGGCATGG ATATCAACCT GACGAAACAG ACTTCCGTTT ATGCCGAAGC CAATTACCGC AACGGGACTC ATGTGGAGTC ACCTATCATG GCTAATATCG GTTTCCGGAT TAATTTCTAA
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Protein sequence | MNTNSKKTYL SIAISSILYA STAMNANADS CTDYTVTDIC EQSKYGAGEF HNIKLGDGVT AGSEDHHFVF NGEGYELYNS NANFSAQIAS GTIRYTEVNN SHFTVNAHHF PDDTIYAGRA ENTTLNDSLM WVATSADQTL AKGNSMVVVS TQMAMVDQIF VTTLNDGSLP FDPVITNSRY EDTSYEMLWG MKNEAKGWDT KATSHDSVFV DASKQSIEAN GHSIGATFYG RATQVVKAGG ESQDTHLFDH SYSWVYAEAK LTGLTEVNDA ATVYLNAAAT QGAYAENVVL NGEDTTLMVR ASLDNNAYAT VDNLILNGGE VVFQQSSGDQ YASLNIGTLS GSGSFLFNTS IAEGKGNFVT IANASGEHKV IVNDSGHEIT SPDMTTLDLI HDLSGDATFT LASISGANII EVDGGTYVYS LNTWDNSARA GGNLWYLGSG LNTGTELEPE PEEKTTPSTD AVLSMASSNQ FIFDGEMQNL RFRKGDLNNN KGDGASVWGR YLTNNTRVNA AHDAAYRLQQ DGFEIGADKV LEMSSGQLVL GGFTSYSNNR VKHARGGNST VDSYSLGAYG TYFDNSGYYV DAVVKANRFK NSLNAHMTNG GSVQSDYNQN AIGGSLEAGY HYSLSNNWFV EPYVRTSYYT AQDKDIALNN GMTANIDNNR SAKGEIGTHL GTKIDLNNGA IIRPYAKVAI EREFIKSNTV TINQVNDFNN DLSGHTAKYG LGMDINLTKQ TSVYAEANYR NGTHVESPIM ANIGFRINF
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