| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1376 |
|---|
| Symbol | |
|---|
| ID | 6089567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1514140 |
|---|
| End bp | 1515909 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641596440 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001720123 |
|---|
| Protein GI | 170023618 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT TGCGCAGAAA ATGGCAGAGC TTGCCGCGCG GCTTAGTTGT GTTGATAACC
GCACTGGTTA TCTACATACC GATATCATTT ATTATTATTC AAAGCTTCCT GTCAGCTCCT
TTTTTCTCCC CTTCAAAGGT ACTGAGTCTT GATGCGTTCA GGTTTATTTT TTCTGATCCT
GATTTTTACA AGGCGCTGAA AAGTGGTTTT ATTCTGGCGA CAGGGCTAGT GGTGATTGCT
ATTCCACTCG GGGGGATCCT GGCCTTTCTG ATGATAAGGA CTGACTTACC TGGCCGGCGG
ATAATTGAAC CGTTGATTCT GGTGCCTATC TTTGTCTCAC CCATGGTCTT GGGCTTTGGT
TATGTGGTGG CGGCTGGGCC TGTGGGCTTC TTCTCTTTGT GGGCAGAATC CTTACTGGGT
TTCGTACCCT GGAATATTTA CGCCATGTCT AGCATCGTGG TGATCGCTGG CCTGACCCAT
GTTCCTCATG CCTATCTCTA TATTTCATCG GCACTACGCA GCGTCGGTTC TGATGTTGAA
GAGGCTGCCC GCACGGCAGG GGCTTCGCCA TTACAGGTGA TGAGTGCGGT CAGTTTGCCA
ATGGTGCGCC CATCGATCCT CTATGCCACC GTGTTGTTGT TCTTCCTGGG GCTAGAAGTA
TTTGGGTTGA TGTTGGTGCT GGGTGATCCG GAAGGAAACT TGGTGCTGGC GACCTATCTC
TATCAATTGA CCAATAAACT GGGTACGCCG TCTTATCATT TGATGGCTGC GGTTGCTGTG
GTGCTCATCT GCATCACTAT TCCGCTCGTG ATGTTACAAC GCATGCTGAT GCGAACGGCT
CACCGTTTTG TTACGGTCAA AGGCAAAGCC TCACAGGCAC GGGCCTTGCC ACTGGGCAAA
TGGCGTTGGG TTGCCGGTGC GGTGGTGGCA TTTTGGTTGA CGGTGACGAT TGGCGTACCG
TTGGTGGGGG TCGTGCTGCG CGCCTTTGTG TCTAACTGGG GGGTTGGGGT GTCCCTTTGG
GATGAACTGT CCCTCAGTAC GTTCTACACC ATTTGGCAAC AGCCGAATCT ACTGCGGGCT
ATCGTTAACT CGATGGCTAT CGGGGTGTTC GGTGGGGCGT TGGCTGTTAT TTGTTATCTG
TTTATTGGTA TCGCGATGCA CCGCAAGCCC GATGGGGTGA CTCGCTTCCT CGACTACAGT
GTATTGGTGC CGCGTGCCGT ACCGGGTTTA TTGGCTGGGT TGGCATTCCT TTGGGTCTTT
CTGTTCTTGC CTATGTGGCT GGATAACTCC CTGAAAGAGG GTTGGCTGGC CGCATTACCC
ATGACCGAGT GGTTACAGGA CCATCTGGTG GTGTGGCTAC GTTCCTTGCG CAGCACCATC
TTCAGTGTCT GGCTGGCGTA TACCGTGGTA TGGATGGCAT ATGGCCTGCG GTTGATCTCC
TCGACCCTGT TGCAGGTCGG ACCAGAGCTG GAAGAAGCCG CGCGCAGTAC TGGTGCCCGC
CGTGGTCAGG TTACCCGCCA TGTCACTATT CCGTTATCCC GCTATGGCCT GATTGGTTCA
TGGTTGCTGA TGTTCTTGAT TTTTGAGCGT GAATATTCCA CCGGTGTTTA TCTCCTTTCA
CCGGGCACGG AAACCATAGG TTCGATGCTG GTCTCGCTGT GGGCGGCGGG TGCCATTGAT
ATCGTCGCCG CACTCTCCTT TATCAATATC CTTCTGGTGG TGTTAGGCCT CGGTATTGCA
CTACGTTTTG GAGTCAAATT ACATGATTGA
|
|---|
| Protein sequence | MKALRRKWQS LPRGLVVLIT ALVIYIPISF IIIQSFLSAP FFSPSKVLSL DAFRFIFSDP
DFYKALKSGF ILATGLVVIA IPLGGILAFL MIRTDLPGRR IIEPLILVPI FVSPMVLGFG
YVVAAGPVGF FSLWAESLLG FVPWNIYAMS SIVVIAGLTH VPHAYLYISS ALRSVGSDVE
EAARTAGASP LQVMSAVSLP MVRPSILYAT VLLFFLGLEV FGLMLVLGDP EGNLVLATYL
YQLTNKLGTP SYHLMAAVAV VLICITIPLV MLQRMLMRTA HRFVTVKGKA SQARALPLGK
WRWVAGAVVA FWLTVTIGVP LVGVVLRAFV SNWGVGVSLW DELSLSTFYT IWQQPNLLRA
IVNSMAIGVF GGALAVICYL FIGIAMHRKP DGVTRFLDYS VLVPRAVPGL LAGLAFLWVF
LFLPMWLDNS LKEGWLAALP MTEWLQDHLV VWLRSLRSTI FSVWLAYTVV WMAYGLRLIS
STLLQVGPEL EEAARSTGAR RGQVTRHVTI PLSRYGLIGS WLLMFLIFER EYSTGVYLLS
PGTETIGSML VSLWAAGAID IVAALSFINI LLVVLGLGIA LRFGVKLHD
|
|---|
| |