| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1286 |
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| Symbol | |
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| ID | 6090329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1412021 |
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| End bp | 1413709 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641596354 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001720037 |
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| Protein GI | 170023532 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGGGGCG ATAATGACGG GCAATTTAGC CTCAACAACG GCGCAATCGC TCAAAACACC
AAGGTCAATG GTGGGCAATT TAACGTTAAT GAAGGCGCGA CCGCCGAGGG TGTGACGGTA
AAAGGCGGTG AATTCAACCT GCGAGCGCGC GCTCAGGCGA TGAAATTAAC CATTGAGTTC
GGTGAAGCAC AGATCGCCGG CACGCTGACC GATGTGACAC TGCGCGGCGG TAATACCACC
CTGGCTAGCA CTGCCGACGT GGCGGGCACC ATTCACTCAA TATCAGGGAG TGCGCTTAAG
GTTTATCAAG GCGCACATAC CGCACAAGCG GATCTCAATC TGGCGGGGCG AGTGGTGTTA
TTCGCCGACG ACGTTGCCCC AATGGCAGCA CTGCCCTCAC GGGCGGTACG TGCTGCCGAT
AACCGGTTAT CCGCGCCATT TACCTTTAAA AGAATCAATA TGAGCGGTGG CACACTGGAT
TTACGCAATG TGAAAAATGC ACAGTTAGTG ATGGACTCAC TGGCAGGCAA CGGCACCTTC
AAACTGGGCT CGATGTTGCA ACAAGACGCC TCGGCACCGC TGAATGTCAC GGGTAACGCG
GATGGCGATT TTATCCTCCA GATAGACGGT AGCGGTATCG ATCCGACCAA CCTTAATGTC
GTTAGTACCG GCGGCGGTGA CGCACGTTTT ACCCTAACCG ATGGCCCGAT AGGCCTTGGC
AACCGCGTGT ATAACCTGGT TAAAGATGCG AGTGGCAAGA TAACACTGGT GGCTAATGAA
TCAACCGTGA CACCGGGTAC AGCCAGTATT TTAGCGGTGG CTAACACCAC ACCGGTTATC
TTTAACGCGG AATTAAGCTC TGTTCAACAG CGTTTGGATA AGCAAAGCAC CGAAGCCAAT
GAAAGCGGCA TCTGGGGTAC CTACCTGCAC AATAACTTTG CAGTAAAAGG CCGTGCCGCT
AACTTCGATC AAACGTTAAA CGGGATGACA TTAGGGGGCG ATAAAGCCAC TGCCCTGACA
GACGGCGTAT TGAGTGTGGG GGGTTTCGCC AGCGCGAGTA CATCAAGTAT TAAGACCGAC
TATCAAAGCA AGGGGAATGT CGATAGCCAC TCATTTGGGG CCTACGCGCA ATATCTTGCC
AACAACGGTT ACTATGTGAA TGGCGTGGTG AAAGCCAATA AATTCAATCA AGATATTCAT
GTTACCAGCG CCGATAACAG CGCCAGCGGC AACACTAATT TCTCGGGTAT GGGGGTGGCA
GTGAAAGCCG GTAAGCATAT CAACCATAAT CATCTGTATG TTTCGCCATA CGTGGCGATG
AGCGCCTTTA GCTCGGGTAA AAGCGTGGTC AAACTGTCTA ACGGCATGGC GGCGCAAAGC
AGCAGCACCC GCTCGATGAT AGGCACCCTT GGGGTGAATG CGGGTTACCC CTTCGTGCTG
AAAAATGGCG TAGAAATGAA ACCTTATGTC AGCGCCTCGG TTGATCACGA ATTTGCTGCC
AATAATAAAT TCAGAGTGAA CCAGGAGATG TTCGATAACA ACCTGAACGG CACGCGAGTG
AACACCGGTG CAGGCCTGAA CGTCAACATC ACCCCTAACC TGTCTGTCGG TTCTGAAGTG
AAGGTGTCCA GCGGAAAAAA CATCAAAACG CCAGTGACCG TTAATCTGAA CGTGGGTTAT
CGCTTCTAA
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| Protein sequence | MGGDNDGQFS LNNGAIAQNT KVNGGQFNVN EGATAEGVTV KGGEFNLRAR AQAMKLTIEF
GEAQIAGTLT DVTLRGGNTT LASTADVAGT IHSISGSALK VYQGAHTAQA DLNLAGRVVL
FADDVAPMAA LPSRAVRAAD NRLSAPFTFK RINMSGGTLD LRNVKNAQLV MDSLAGNGTF
KLGSMLQQDA SAPLNVTGNA DGDFILQIDG SGIDPTNLNV VSTGGGDARF TLTDGPIGLG
NRVYNLVKDA SGKITLVANE STVTPGTASI LAVANTTPVI FNAELSSVQQ RLDKQSTEAN
ESGIWGTYLH NNFAVKGRAA NFDQTLNGMT LGGDKATALT DGVLSVGGFA SASTSSIKTD
YQSKGNVDSH SFGAYAQYLA NNGYYVNGVV KANKFNQDIH VTSADNSASG NTNFSGMGVA
VKAGKHINHN HLYVSPYVAM SAFSSGKSVV KLSNGMAAQS SSTRSMIGTL GVNAGYPFVL
KNGVEMKPYV SASVDHEFAA NNKFRVNQEM FDNNLNGTRV NTGAGLNVNI TPNLSVGSEV
KVSSGKNIKT PVTVNLNVGY RF
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