Gene YPK_1046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1046 
Symbol 
ID6091144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1182623 
End bp1183873 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content47% 
IMG OID641596109 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001719800 
Protein GI170023295 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0326494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGATT CAAATCATAA TTCTGGTCGT CGCCGTCTAT TACAAGGTGC CGCAGCAGCT 
TGGATGCTGA GTATAAGCCG GGTTGGATTT GCCGCATCTT CACATATTGT TGCTGTCCGG
GTGTGGCCCT CTTCTACTTA CACCCGAGTC ACATTAGAGT CAAATACACC ACTGAAGTAC
CGCCAATTCG CCTTAACTCA TCCCGACCGT ATTGTTGTTG ATATTGAAGG CGTACAGCTA
AATAGCGTAT TGAAAGAGAT CAGCCGGCAA GTTCAATCCG CTGACCCTTA TCTCAAACAG
GCGCGGGTAG GGCAGTTCGA TAAAAATACT GTTCGTTTGG TATTGGAACT GAAGCAGAGT
ATCAGCCCTC AATTATTTAC CCTGAAACCT TTCGCTGAAT TCCGTAATCG CTTAGTGGTC
GATCTGTACC CTGCGGAGGG GGGCACATCG GCAGAAGATG ATCCGCTGCT GGCCCTATTG
GAAGATTACA ATAAAGGTAA TGTGGATCGA ACCTTGCCAC CAGAAACACC CAAAGCAGGT
AAAGCAGGGC GTGACAGACC CATTATTATC ATGTTGGACC CAGGACATGG CGGGGAAGAT
CCTGGGGCTA TCGGCAAAAA TAAAACCAAG GAAAAAGACA TTGTGCTGCA AATTGCTCGT
CGGTTACGGG TGCTGATTCA GAAAGAAGCC AATATGCGGG TGTTTATGAC TCGTAATGAA
GATGTCTTTA TCCCGCTGAA AGTTCGGGTG GCAAAAGCAC GTAAGCTTCG TGCGGATTTA
TTCATTTCGA TTCATGCCGA TGCTTTTACC AATCGGGCGG CTAGCGGCTC CTCGGTCTTT
GCTTTATCGA CCAAAGGAGC CACCAGTACT GCCGCTCGTT TTCTGGCTCA GACACAAAAT
GAGGCCGATC AGATTGGTGG GGTCAGCAAA AGTGGTGATC CTTATCTTGA CCATACCATT
ATTGATTTAT TGCAAACCGC AACTATCAAC GATAGCTTGA AGTTTGGTAA AGAAGTCCTG
AGTCGGATGA GTAAAATCAA CAAATTGCAC AAAAATCGTG TCGATCAAGC AGGATTTGCG
GTATTAAAGG CCCCTGATAT CCCGTCAATT CTGGTAGAGA CTGCGTTCAT CAGTAATTTG
GAAGAAGAGC GGAAATTACG TACCAGCCGT TTTCAGCAAC AGATAGCGGA ATCTATTTTT
GCTGGTATCA AAGCGTACTT TGCTAATGGC GGGGCAATGG CGCGATTGTG A
 
Protein sequence
MADSNHNSGR RRLLQGAAAA WMLSISRVGF AASSHIVAVR VWPSSTYTRV TLESNTPLKY 
RQFALTHPDR IVVDIEGVQL NSVLKEISRQ VQSADPYLKQ ARVGQFDKNT VRLVLELKQS
ISPQLFTLKP FAEFRNRLVV DLYPAEGGTS AEDDPLLALL EDYNKGNVDR TLPPETPKAG
KAGRDRPIII MLDPGHGGED PGAIGKNKTK EKDIVLQIAR RLRVLIQKEA NMRVFMTRNE
DVFIPLKVRV AKARKLRADL FISIHADAFT NRAASGSSVF ALSTKGATST AARFLAQTQN
EADQIGGVSK SGDPYLDHTI IDLLQTATIN DSLKFGKEVL SRMSKINKLH KNRVDQAGFA
VLKAPDIPSI LVETAFISNL EEERKLRTSR FQQQIAESIF AGIKAYFANG GAMARL