| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1006 |
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| Symbol | |
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| ID | 6091067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1133683 |
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| End bp | 1134885 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 641596069 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001719760 |
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| Protein GI | 170023255 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGTAT TTAAATATGT TGCCATCAGC AGAAGTGGAA CCAAGATAAC AGGTGATATT
GATGCGGAAA ACATACGTAT AGCCCGTTAT CTCCTTTACA AAAAAAACAT GCATGTCTTA
AGTATAAAAA AAAGAATTTT ACTTTTTAAT AAGTATGTGG TCAAAAAAAA TAGTAATAAG
ACGGATTTGG TATTAATTAC ACGGCAGATA GCGACATTAG TAAATGCTTC AATGCCACTA
GATGAGGTTT TAGATATTGT TGGGAAACAA AATAGTAAAA GTAAAATGAT TGAAATAATT
CAAAGGATTA GAGTTAATAT ACAGGAAGGG CATTCATTCG CTGATGCGCT ATCTCCGTTT
TCAGCAGTAT TTAGCCCATT ATACAAAACG ATGGTTACCG CTGGAGAGGT ATCAGGGCAT
CTGGGATTAG TGCTGGTTCG TCTTGCTGAT CATATTGAGC AGACACAAAA AATACAAAGA
AAAATCATTC AGGCACTTAT CTACCCTTGT GTGTTGGTTT TAATATCACT AAGTGTCATT
ATCATATTAT TGACAGCGGT TGTACCGAAC ATAGTAGAGC AGTTTTCTTT TTCAGAGACG
GCGTTACCAT TATCAACAAA AGTATTGATG ATACTCAGTT ATAGTATAAA AGAAAATGTT
ATTTTTATCA TGGCTATAGG TGTCTCGGCA GTGATTTTTT TAAATAGATT ACTAAAAATA
AATAAGATAA ATGTCTTTTT TCATAGGCAC TATTTAAGTT TGCCAATGCT GGGTAATATG
TTTGTTCGTA TAAATACATC TCGTTATCTT AGAACATTAA CAACACTACA TTCTAATGGT
GTGACAATCG TACAGGCAAT GAGTATTAGT AATGCGGTAT TAACGAATGT ATATATAAAA
AATAAGTTAA ACATTTCAGT TAAATTGGTC AGTGAGGGGT GTAGTTTATC GTCATCTTTA
GTTGATAGTG GAGTATTCCC CCCGATCATA TTACATATGA TCATATCGGG GGAGCGTAGT
GGTGAGTTGG ACCATATGCT AGAAACTGTG GCGGGTGTCC AGGAAGAAGA ACTGATGAAT
CAAATAAGTA TAGTAATGTC ATTGTTAGAG CCAACCATAA TTATAGTTAT GGCCGCGTTT
ATTTCATTTG TTATTCTGTC AATTCTTCAG CCAATACTTG AAATTAATAG CCTTGTCATG
TAA
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| Protein sequence | MAVFKYVAIS RSGTKITGDI DAENIRIARY LLYKKNMHVL SIKKRILLFN KYVVKKNSNK
TDLVLITRQI ATLVNASMPL DEVLDIVGKQ NSKSKMIEII QRIRVNIQEG HSFADALSPF
SAVFSPLYKT MVTAGEVSGH LGLVLVRLAD HIEQTQKIQR KIIQALIYPC VLVLISLSVI
IILLTAVVPN IVEQFSFSET ALPLSTKVLM ILSYSIKENV IFIMAIGVSA VIFLNRLLKI
NKINVFFHRH YLSLPMLGNM FVRINTSRYL RTLTTLHSNG VTIVQAMSIS NAVLTNVYIK
NKLNISVKLV SEGCSLSSSL VDSGVFPPII LHMIISGERS GELDHMLETV AGVQEEELMN
QISIVMSLLE PTIIIVMAAF ISFVILSILQ PILEINSLVM
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