Gene YPK_0687 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0687 
Symbol 
ID6088374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp748063 
End bp748485 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content41% 
IMG OID641595748 
Productpeptidase A24A prepilin type IV 
Protein accessionYP_001719441 
Protein GI170022936 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4960] Flp pilus assembly protein, protease CpaA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGTAA TTAGATTATC GTTAATGGTA TTAATCGTCT CTCAGCTATT ATTTGTTTGT 
TACAGTGACA TTCGCCACAG AATAATAAGC AATAAGTTTG TTATTAGCAT AGCATGCAAT 
GCCATTATAT TGAGCCTGGT AACGCACCAT ACTGTGAGTA TCATTATTCC TATCGTCGCC 
CTATTTATCG GCTATATTAT TTTCCATTTC AACGTGATGG GCGGCGGCGA TGTAAAATTG 
ATCACAGCAC TCCTGCTGGC ACTGACGGCA GAACAGTCAT TAAATTTTAT CATCTACACG 
GCGGTCATGG GCGGCGTTGT TATGGTGGTG GGTTTATTAA TCAACCGCGT TGATATCCAA 
AAACGCGGGG TTCCCTACGC CGTTGCTATC ACTGCCGGGT TTCTATCATC TGTACTAATT 
TAA
 
Protein sequence
MDVIRLSLMV LIVSQLLFVC YSDIRHRIIS NKFVISIACN AIILSLVTHH TVSIIIPIVA 
LFIGYIIFHF NVMGGGDVKL ITALLLALTA EQSLNFIIYT AVMGGVVMVV GLLINRVDIQ 
KRGVPYAVAI TAGFLSSVLI